Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RNU6-1309P-201ENST00000363305 108 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 RNU6-899P-201ENST00000363947 107 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.217-201ENST00000364214 105 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 RNU6-60P-201ENST00000364792 103 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 RNU6-1080P-201ENST00000383982 107 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 MIR1302-6-201ENST00000408466 90 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 MTCYBP9-201ENST00000431021 303 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 RNU7-141P-201ENST00000459304 62 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.641-201ENST00000459414 105 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 RNU6-570P-201ENST00000517051 105 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 CBX3P4-201ENST00000538909 354 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 MIR4421-201ENST00000578133 69 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 MIR4422-201ENST00000581938 83 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU6-1272P-201ENST00000362776 107 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU6-238P-201ENST00000363313 106 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU6-674P-201ENST00000363831 107 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.253-201ENST00000364562 112 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 SNORD48-201ENST00000364953 64 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNA5SP363-201ENST00000365072 115 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU6-53P-201ENST00000365367 106 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU6-969P-201ENST00000383900 105 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.461-201ENST00000384263 103 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU6-472P-201ENST00000384299 107 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.512-201ENST00000384518 102 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU6-997P-201ENST00000384725 107 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 MIR513A1-201ENST00000385138 129 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU1-78P-201ENST00000391248 165 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNU2-14P-201ENST00000411053 191 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 HSPE1P24-201ENST00000450782 238 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 AC117454.1-201ENST00000491120 168 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 RNA5SP168-201ENST00000516642 112 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 AL591926.4-201ENST00000616895 298 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 AC027279.3-201ENST00000625055 122 ntBASIC1.57□□□□□ -2.16
COL28A1Q2UY09 MIR96-201ENST00000362288 78 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.30-201ENST00000362572 97 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 SNORD1A-201ENST00000364968 72 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 RNU6-144P-201ENST00000383951 107 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.556-201ENST00000384677 113 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 MT-TW-201ENST00000387382 68 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 RNU6-763P-201ENST00000390865 106 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.621-201ENST00000411065 96 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 CALM2P4-201ENST00000430810 426 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 RPL23AP54-201ENST00000495129 419 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.56□□□□□ -2.16
COL28A1Q2UY09 DEFB108E-201ENST00000524692 240 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.56□□□□□ -2.16
COL28A1Q2UY09 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.56□□□□□ -2.16
COL28A1Q2UY09 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC1.56□□□□□ -2.16
COL28A1Q2UY09 SNORD3E-202ENST00000627253 216 ntBASIC1.56□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.203-201ENST00000364106 102 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.237-201ENST00000364439 102 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.275-201ENST00000364726 110 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 U8.16-201ENST00000391279 133 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 SNORA36B-201ENST00000410438 131 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 AC027119.1-201ENST00000440877 241 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 AL118496.2-201ENST00000448300 230 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.637-201ENST00000459424 114 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 CYCTP-201ENST00000504253 315 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 MIR2681-201ENST00000581814 105 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 AC013791.1-201ENST00000616619 62 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.55□□□□□ -2.16
COL28A1Q2UY09 ZNF209P-201ENST00000593450 2304 ntBASIC1.55□□□□□ -2.16
COL28A1Q2UY09 RNU6-1048P-201ENST00000364054 107 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.483-201ENST00000384380 101 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 MIR522-201ENST00000385071 87 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 SNORA67.6-201ENST00000391093 99 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 RNU6-437P-201ENST00000459408 95 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 AC087685.1-201ENST00000587507 141 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 AC005357.1-201ENST00000588399 301 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 U2.14-201ENST00000615943 113 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.54□□□□□ -2.16
COL28A1Q2UY09 MIR8063-201ENST00000621930 81 ntBASIC1.54□□□□□ -2.16
COL28A1Q2UY09 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.54□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.44-201ENST00000362676 108 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 RNU6-833P-201ENST00000363486 107 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.53□□□□□ -2.16
COL28A1Q2UY09 MIR1302-3-201ENST00000408128 138 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 AC079140.2-201ENST00000506193 142 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.714-201ENST00000517065 90 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 RNU6-1223P-201ENST00000517124 104 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 AC120024.3-201ENST00000603167 156 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 AL353770.2-201ENST00000620024 78 ntBASIC1.53□□□□□ -2.16
COL28A1Q2UY09 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.52□□□□□ -2.17
COL28A1Q2UY09 MIR126-201ENST00000362291 85 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 SNORD68-201ENST00000363214 84 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.396-201ENST00000383949 103 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 MTCO2P33-201ENST00000402100 465 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 MTND3P2-201ENST00000438452 342 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.52□□□□□ -2.17
COL28A1Q2UY09 RPS29P1-201ENST00000465274 159 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 SCARNA24.2-201ENST00000516968 130 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 MIR5692C2-201ENST00000577959 77 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 MIR5688-201ENST00000580619 83 ntBASIC1.52□□□□□ -2.17
COL28A1Q2UY09 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.52□□□□□ -2.17
COL28A1Q2UY09 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.52□□□□□ -2.17
COL28A1Q2UY09 RNU6-199P-201ENST00000362954 107 ntBASIC1.51□□□□□ -2.17
COL28A1Q2UY09 Y_RNA.82-201ENST00000363000 102 ntBASIC1.51□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 264.4 ms