Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 Y_RNA.172-201ENST00000363765 102 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNY3P5-201ENST00000384127 102 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU6-748P-201ENST00000384648 107 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 Y_RNA.572-201ENST00000384757 98 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AL355497.1-201ENST00000406262 551 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AC004866.1-201ENST00000411748 78 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AC019205.3-201ENST00000424573 156 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU7-141P-201ENST00000459304 62 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
COL4A4P53420 RNU4-57P-201ENST00000515980 135 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RN7SKP164-201ENST00000516138 266 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU6-561P-201ENST00000516222 102 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AC090821.2-201ENST00000523552 176 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AL391903.3-201ENST00000612158 163 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AP001340.1-201ENST00000624405 217 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 MIR203B-201ENST00000636080 86 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AL589743.1-201ENST00000551932 2712 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU4-15P-201ENST00000362613 141 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU6-1210P-201ENST00000363775 107 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU6-1048P-201ENST00000364054 107 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 SNORD87-201ENST00000364849 89 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 Y_RNA.287-201ENST00000364853 94 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 Y_RNA.361-201ENST00000365515 120 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 SNORA72.4-201ENST00000384174 132 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU6-768P-201ENST00000384683 107 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AL031003.1-201ENST00000404229 172 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 MIR1185-2-201ENST00000408687 86 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.35□□□□□ -2.19
COL4A4P53420 FTH1P12-201ENST00000432137 551 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AL441985.1-201ENST00000457727 251 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RPL30P14-201ENST00000482744 348 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 SNORA25.12-201ENST00000516202 82 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 RNU2-56P-201ENST00000516826 190 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.35□□□□□ -2.19
COL4A4P53420 MIR4724-201ENST00000579485 89 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 AL391813.1-201ENST00000603098 260 ntBASIC1.35□□□□□ -2.19
COL4A4P53420 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
COL4A4P53420 AL359851.1-201ENST00000569460 4997 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AL161722.3-201ENST00000605789 2983 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.34□□□□□ -2.19
COL4A4P53420 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC1.34□□□□□ -2.19
COL4A4P53420 RNU6-834P-201ENST00000362367 110 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 Y_RNA.24-201ENST00000362508 103 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 RNU6-1272P-201ENST00000362776 107 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 RNU6-270P-201ENST00000364131 105 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 RNU6-153P-201ENST00000364422 104 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 Y_RNA.415-201ENST00000384012 112 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 MIR616-201ENST00000385293 97 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 RNA5SP354-201ENST00000391247 136 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AL606845.1-201ENST00000404881 255 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AC023141.4-201ENST00000412031 328 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 PTGES3P4-201ENST00000426243 356 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AL135790.2-201ENST00000437701 267 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC1.34□□□□□ -2.19
COL4A4P53420 AL121914.1-201ENST00000450188 156 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.34□□□□□ -2.19
COL4A4P53420 SNORD65B-201ENST00000459126 73 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AC087343.1-201ENST00000477341 475 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 RNU7-115P-201ENST00000516433 55 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 RNU6-107P-201ENST00000516643 102 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AC006199.1-201ENST00000548728 219 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 RPS15AP11-201ENST00000594193 385 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC1.34□□□□□ -2.19
COL4A4P53420 HSPE1P7-201ENST00000604681 321 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 Y_RNA.802-201ENST00000614892 130 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC1.34□□□□□ -2.19
COL4A4P53420 AC010889.1-201ENST00000566193 2666 ntBASIC1.34□□□□□ -2.2
COL4A4P53420 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
COL4A4P53420 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.34□□□□□ -2.2
COL4A4P53420 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC1.33□□□□□ -2.2
COL4A4P53420 AL391516.1-201ENST00000554380 2449 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 RNU6-1082P-201ENST00000364574 107 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 U8.7-201ENST00000364940 136 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 RNU4-11P-201ENST00000365287 132 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 Y_RNA.420-201ENST00000384043 110 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 MIR627-201ENST00000384979 97 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 MIR222-201ENST00000384992 110 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 MIR208B-201ENST00000401172 77 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 RNU6-383P-201ENST00000410864 94 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 RNU2-55P-201ENST00000411146 174 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 AL357134.1-201ENST00000445848 426 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC1.33□□□□□ -2.2
COL4A4P53420 RNU7-197P-201ENST00000458836 62 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 AC112771.1-201ENST00000463581 102 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 AC091179.3-201ENST00000474761 144 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.33□□□□□ -2.2
COL4A4P53420 RNU6-1007P-201ENST00000516586 107 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 AC036111.3-201ENST00000526389 112 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 AC084364.2-201ENST00000546924 395 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 POLR3GP1-201ENST00000594073 261 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 SNORD11B-201ENST00000607707 90 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.33□□□□□ -2.2
COL4A4P53420 MIR6129-201ENST00000616087 109 ntBASIC1.33□□□□□ -2.2
COL4A4P53420 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC1.32□□□□□ -2.2
COL4A4P53420 U3.9-201ENST00000363823 204 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 SNORD115-30-201ENST00000364117 82 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 RNU6-597P-201ENST00000365620 102 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 SNORA22-201ENST00000383907 134 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 SNORA12-201ENST00000391162 147 ntBASIC1.32□□□□□ -2.2
COL4A4P53420 AL512604.1-201ENST00000404812 257 ntBASIC1.32□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms