Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 Y_RNA.312-201ENST00000365089 102 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 Y_RNA.322-201ENST00000365151 102 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 RNU6-463P-201ENST00000384340 107 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 Y_RNA.539-201ENST00000384635 107 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 RNU6-376P-201ENST00000384731 106 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 HMGN2P39-201ENST00000398005 273 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 RNU2-38P-201ENST00000410856 79 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.88□□□□□ -2.27
COL5A1P20908 AC005002.2-201ENST00000438228 269 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 RNU1-131P-201ENST00000458943 161 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 Y_RNA.650-201ENST00000459002 102 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 AC010409.1-201ENST00000487382 476 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 Y_RNA.680-201ENST00000516441 93 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 SNORA27.4-201ENST00000516650 95 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 RNU1-142P-201ENST00000516682 145 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 Y_RNA.777-201ENST00000516982 102 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 SUMO2P18-201ENST00000518873 252 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 MIR4643-201ENST00000577473 78 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 hsa-mir-3130-1.1-201ENST00000579223 75 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 POLR3GP1-201ENST00000594073 261 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 Y_RNA.771-201ENST00000598668 102 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 MIR2909-201ENST00000617113 69 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 Y_RNA.789-201ENST00000622480 102 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 MIR338-201ENST00000636369 67 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 GS1-279B7.1-204ENST00000641809 378 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 AC018630.2-201ENST00000534866 2403 ntBASIC0.88□□□□□ -2.27
COL5A1P20908 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.88□□□□□ -2.27
COL5A1P20908 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.87□□□□□ -2.27
COL5A1P20908 Y_RNA.149-201ENST00000363558 117 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 Y_RNA.237-201ENST00000364439 102 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 Y_RNA.294-201ENST00000364916 102 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 LINC00583-201ENST00000381010 387 ntTSL 2 BASIC0.87□□□□□ -2.27
COL5A1P20908 RNU6-926P-201ENST00000384075 107 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 RNU6-360P-201ENST00000390944 104 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.87□□□□□ -2.27
COL5A1P20908 AC069257.2-201ENST00000441819 155 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC0.87□□□□□ -2.27
COL5A1P20908 AC091021.1-201ENST00000468051 388 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 AC008834.1-201ENST00000511612 175 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC0.87□□□□□ -2.27
COL5A1P20908 FAM71BP1-201ENST00000604431 523 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 Y_RNA.188-201ENST00000363952 111 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 SNORD27-201ENST00000363981 72 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 Y_RNA.275-201ENST00000364726 110 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 Y_RNA.418-201ENST00000384029 102 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 RNU6-102P-201ENST00000384485 104 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 RNU2-61P-201ENST00000411069 191 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.87□□□□□ -2.27
COL5A1P20908 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC0.87□□□□□ -2.27
COL5A1P20908 AC005786.1-201ENST00000588553 154 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 Z83818.1-201ENST00000603584 150 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 5S_rRNA.11-201ENST00000618635 84 ntBASIC0.87□□□□□ -2.27
COL5A1P20908 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.87□□□□□ -2.27
COL5A1P20908 Y_RNA.65-201ENST00000362846 100 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 SNORD115-3-201ENST00000363100 82 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 RNU1-96P-201ENST00000364163 162 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 Y_RNA.277-201ENST00000364754 102 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 Y_RNA.292-201ENST00000364904 97 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 Y_RNA.489-201ENST00000384410 101 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 MT-TT-201ENST00000387460 66 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 RNU6-651P-201ENST00000411040 105 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
COL5A1P20908 CST2P1-201ENST00000425770 87 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 AC010154.1-201ENST00000425857 269 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 BTF3P11-201ENST00000426582 477 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 AL606517.2-201ENST00000442855 241 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 Y_RNA.668-201ENST00000516233 93 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 RNU6-388P-201ENST00000517012 105 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 RNU6-389P-201ENST00000517048 105 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 MIR3684-201ENST00000579779 74 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 AC009779.6-201ENST00000603972 165 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 AP003357.1-201ENST00000604497 148 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 AC069114.2-201ENST00000604699 304 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC0.86□□□□□ -2.27
COL5A1P20908 U6.73-201ENST00000619194 103 ntBASIC0.86□□□□□ -2.27
COL5A1P20908 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC0.86□□□□□ -2.27
COL5A1P20908 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.85□□□□□ -2.27
COL5A1P20908 RNU6-271P-201ENST00000363858 105 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 Y_RNA.214-201ENST00000364201 112 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 RNU6-117P-201ENST00000365415 107 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 Y_RNA.447-201ENST00000384184 113 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 SNORA20B-201ENST00000384220 132 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 SNORA8-201ENST00000384574 139 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 MIR562-201ENST00000384894 95 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 SNORD58.1-201ENST00000391313 66 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 MIR1278-201ENST00000408753 81 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 MIR1197-201ENST00000408818 88 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 AC016909.1-201ENST00000415916 166 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 AC024067.1-201ENST00000426199 223 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 AL135790.2-201ENST00000437701 267 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 SNORD2.1-201ENST00000458762 69 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 RNU7-141P-201ENST00000459304 62 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 RPL39P38-201ENST00000467018 153 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 MTATP8P1-201ENST00000467115 207 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.85□□□□□ -2.27
COL5A1P20908 RNU4-71P-201ENST00000516258 113 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 RNU7-115P-201ENST00000516433 55 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 RNU2-31P-201ENST00000516954 155 ntBASIC0.85□□□□□ -2.27
COL5A1P20908 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 134.1 ms