Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 RNU6-1187P-201ENST00000364771 110 ntBASIC0.91□□□□□ -2.26
SDC3O75056 snoU2-30.1-201ENST00000365012 70 ntBASIC0.91□□□□□ -2.26
SDC3O75056 SNORD42.2-201ENST00000365570 69 ntBASIC0.91□□□□□ -2.26
SDC3O75056 Y_RNA.471-201ENST00000384312 102 ntBASIC0.91□□□□□ -2.26
SDC3O75056 RNU6-937P-201ENST00000384325 106 ntBASIC0.91□□□□□ -2.26
SDC3O75056 MIR532-201ENST00000385025 91 ntBASIC0.91□□□□□ -2.26
SDC3O75056 MIR136-201ENST00000385207 82 ntBASIC0.91□□□□□ -2.26
SDC3O75056 RNU6-131P-201ENST00000391144 107 ntBASIC0.91□□□□□ -2.26
SDC3O75056 AL590004.1-201ENST00000405321 300 ntBASIC0.91□□□□□ -2.26
SDC3O75056 AC022028.1-201ENST00000412054 408 ntBASIC0.91□□□□□ -2.26
SDC3O75056 SNRPGP10-201ENST00000432323 225 ntBASIC0.91□□□□□ -2.26
SDC3O75056 AC002429.1-201ENST00000437672 148 ntBASIC0.91□□□□□ -2.26
SDC3O75056 AC245047.8-201ENST00000456455 284 ntBASIC0.91□□□□□ -2.26
SDC3O75056 RPS26P48-201ENST00000491713 339 ntBASIC0.91□□□□□ -2.26
SDC3O75056 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.91□□□□□ -2.26
SDC3O75056 MIR4661-201ENST00000582720 75 ntBASIC0.91□□□□□ -2.26
SDC3O75056 AC007485.1-201ENST00000616755 206 ntBASIC0.91□□□□□ -2.26
SDC3O75056 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.91□□□□□ -2.26
SDC3O75056 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
SDC3O75056 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.9□□□□□ -2.27
SDC3O75056 RNU6-1084P-201ENST00000362498 107 ntBASIC0.9□□□□□ -2.27
SDC3O75056 Y_RNA.143-201ENST00000363520 106 ntBASIC0.9□□□□□ -2.27
SDC3O75056 SNORD50B-201ENST00000364995 70 ntBASIC0.9□□□□□ -2.27
SDC3O75056 RNU6-969P-201ENST00000383900 105 ntBASIC0.9□□□□□ -2.27
SDC3O75056 RNU6-21P-201ENST00000384710 107 ntBASIC0.9□□□□□ -2.27
SDC3O75056 RNU6-130P-201ENST00000411112 103 ntBASIC0.9□□□□□ -2.27
SDC3O75056 MTND4P19-201ENST00000446659 478 ntBASIC0.9□□□□□ -2.27
SDC3O75056 snoU13.25-201ENST00000458945 104 ntBASIC0.9□□□□□ -2.27
SDC3O75056 RNU7-115P-201ENST00000516433 55 ntBASIC0.9□□□□□ -2.27
SDC3O75056 SNORA74.3-201ENST00000517108 154 ntBASIC0.9□□□□□ -2.27
SDC3O75056 AC090142.3-201ENST00000519012 385 ntBASIC0.9□□□□□ -2.27
SDC3O75056 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.9□□□□□ -2.27
SDC3O75056 AC024405.2-202ENST00000532731 184 ntBASIC0.9□□□□□ -2.27
SDC3O75056 CYP3A137P-201ENST00000562436 69 ntBASIC0.9□□□□□ -2.27
SDC3O75056 AC127455.1-201ENST00000565496 145 ntBASIC0.9□□□□□ -2.27
SDC3O75056 MIR5000-201ENST00000577717 103 ntBASIC0.9□□□□□ -2.27
SDC3O75056 PART1_1.1-201ENST00000611761 217 ntBASIC0.9□□□□□ -2.27
SDC3O75056 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.9□□□□□ -2.27
SDC3O75056 AC007742.2-201ENST00000618226 398 ntBASIC0.9□□□□□ -2.27
SDC3O75056 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC0.89□□□□□ -2.27
SDC3O75056 Y_RNA.203-201ENST00000364106 102 ntBASIC0.89□□□□□ -2.27
SDC3O75056 SNORA63.7-201ENST00000365579 123 ntBASIC0.89□□□□□ -2.27
SDC3O75056 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.89□□□□□ -2.27
SDC3O75056 RNU4-30P-201ENST00000410245 143 ntBASIC0.89□□□□□ -2.27
SDC3O75056 MLLT10P1-201ENST00000418346 262 ntBASIC0.89□□□□□ -2.27
SDC3O75056 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.89□□□□□ -2.27
SDC3O75056 SNORD124-201ENST00000459577 104 ntBASIC0.89□□□□□ -2.27
SDC3O75056 AC010655.3-201ENST00000478818 450 ntBASIC0.89□□□□□ -2.27
SDC3O75056 SEPT14P8-201ENST00000508026 178 ntBASIC0.89□□□□□ -2.27
SDC3O75056 MIR3192-201ENST00000584920 77 ntBASIC0.89□□□□□ -2.27
SDC3O75056 AC087685.1-201ENST00000587507 141 ntBASIC0.89□□□□□ -2.27
SDC3O75056 SNORD113-5-201ENST00000607261 78 ntBASIC0.89□□□□□ -2.27
SDC3O75056 MIR6857-201ENST00000613267 93 ntBASIC0.89□□□□□ -2.27
SDC3O75056 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.89□□□□□ -2.27
SDC3O75056 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.88□□□□□ -2.27
SDC3O75056 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
SDC3O75056 Y_RNA.222-201ENST00000364264 102 ntBASIC0.88□□□□□ -2.27
SDC3O75056 U8.7-201ENST00000364940 136 ntBASIC0.88□□□□□ -2.27
SDC3O75056 SNORD114-24-201ENST00000365029 72 ntBASIC0.88□□□□□ -2.27
SDC3O75056 Y_RNA.383-201ENST00000383855 97 ntBASIC0.88□□□□□ -2.27
SDC3O75056 Y_RNA.509-201ENST00000384506 99 ntBASIC0.88□□□□□ -2.27
SDC3O75056 RNU6-1248P-201ENST00000391096 64 ntBASIC0.88□□□□□ -2.27
SDC3O75056 RNU6-1132P-201ENST00000459214 107 ntBASIC0.88□□□□□ -2.27
SDC3O75056 RNU7-21P-201ENST00000459430 62 ntBASIC0.88□□□□□ -2.27
SDC3O75056 RPL39P28-201ENST00000465655 155 ntBASIC0.88□□□□□ -2.27
SDC3O75056 AP003716.2-201ENST00000528260 108 ntBASIC0.88□□□□□ -2.27
SDC3O75056 MIR548AY-201ENST00000617669 107 ntBASIC0.88□□□□□ -2.27
SDC3O75056 AC090971.5-201ENST00000621102 293 ntBASIC0.88□□□□□ -2.27
SDC3O75056 RNU6-342P-201ENST00000384521 104 ntBASIC0.87□□□□□ -2.27
SDC3O75056 MIR516B2-201ENST00000385190 85 ntBASIC0.87□□□□□ -2.27
SDC3O75056 MTND4LP11-201ENST00000422184 280 ntBASIC0.87□□□□□ -2.27
SDC3O75056 AC117454.1-201ENST00000491120 168 ntBASIC0.87□□□□□ -2.27
SDC3O75056 RNU7-43P-201ENST00000516554 64 ntBASIC0.87□□□□□ -2.27
SDC3O75056 AC136628.3-201ENST00000521868 290 ntBASIC0.87□□□□□ -2.27
SDC3O75056 DEFB108E-201ENST00000524692 240 ntBASIC0.87□□□□□ -2.27
SDC3O75056 MIR3145-201ENST00000580727 82 ntBASIC0.87□□□□□ -2.27
SDC3O75056 AC008163.1-202ENST00000636004 2889 ntBASIC0.86□□□□□ -2.27
SDC3O75056 MIR369-201ENST00000362155 70 ntBASIC0.86□□□□□ -2.27
SDC3O75056 RNA5SP264-201ENST00000363115 107 ntBASIC0.86□□□□□ -2.27
SDC3O75056 RNU6-674P-201ENST00000363831 107 ntBASIC0.86□□□□□ -2.27
SDC3O75056 Y_RNA.424-201ENST00000384063 103 ntBASIC0.86□□□□□ -2.27
SDC3O75056 MIR200A-201ENST00000384875 90 ntBASIC0.86□□□□□ -2.27
SDC3O75056 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.86□□□□□ -2.27
SDC3O75056 POLR2J4-204ENST00000418424 324 ntBASIC0.86□□□□□ -2.27
SDC3O75056 POLR2KP2-201ENST00000438155 177 ntBASIC0.86□□□□□ -2.27
SDC3O75056 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.86□□□□□ -2.27
SDC3O75056 RPL23AP54-201ENST00000495129 419 ntBASIC0.86□□□□□ -2.27
SDC3O75056 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.86□□□□□ -2.27
SDC3O75056 ACA64.5-201ENST00000516207 127 ntBASIC0.86□□□□□ -2.27
SDC3O75056 C8orf59P2-201ENST00000603441 271 ntBASIC0.86□□□□□ -2.27
SDC3O75056 AL020996.3-201ENST00000606617 222 ntBASIC0.86□□□□□ -2.27
SDC3O75056 MIR6779-201ENST00000617283 64 ntBASIC0.86□□□□□ -2.27
SDC3O75056 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.86□□□□□ -2.27
SDC3O75056 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.85□□□□□ -2.27
SDC3O75056 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.85□□□□□ -2.27
SDC3O75056 Y_RNA.183-201ENST00000363882 113 ntBASIC0.85□□□□□ -2.27
SDC3O75056 SNORD14E-201ENST00000364009 85 ntBASIC0.85□□□□□ -2.27
SDC3O75056 Y_RNA.286-201ENST00000364813 102 ntBASIC0.85□□□□□ -2.27
SDC3O75056 Y_RNA.419-201ENST00000384041 102 ntBASIC0.85□□□□□ -2.27
SDC3O75056 MIR520C-201ENST00000385005 87 ntBASIC0.85□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 182 ms