Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 RNU7-28P-201ENST00000516759 62 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 MIR8054-201ENST00000620877 86 ntBASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.15□□□□□ -2.07
PCDHA1Q9Y5I3 ZNF702P-202ENST00000434269 1966 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 MIR367-201ENST00000362299 68 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP99-201ENST00000364020 114 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNU4-10P-201ENST00000364383 140 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.308-201ENST00000365043 101 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNU4-17P-201ENST00000365598 141 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-1080P-201ENST00000383982 107 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.435-201ENST00000384095 112 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-950P-201ENST00000384651 107 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-482P-201ENST00000391068 107 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP212-201ENST00000391223 107 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP338-201ENST00000410495 85 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 AL158823.1-201ENST00000418441 478 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 CYCSP49-201ENST00000420810 319 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 AL049830.1-201ENST00000468034 425 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 RPL23AP63-201ENST00000498752 471 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 SNORA81.3-201ENST00000517283 198 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 AL353997.5-201ENST00000618886 171 ntBASIC2.14□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.24-201ENST00000362508 103 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-440P-201ENST00000390882 105 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-918P-201ENST00000391219 106 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-381P-201ENST00000391259 108 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 AL512604.1-201ENST00000404812 257 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-383P-201ENST00000410864 94 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.621-201ENST00000411065 96 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP481-201ENST00000516814 122 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 MIR4308-201ENST00000580634 81 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 Clostridiales-1.3-201ENST00000637703 147 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 AP000553.5-201ENST00000641933 54 ntBASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.13□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-1020P-201ENST00000363684 107 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-969P-201ENST00000383900 105 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 MIR9-3-201ENST00000385084 90 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 MIR1278-201ENST00000408753 81 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 RN7SKP101-201ENST00000411376 320 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 AC009310.1-201ENST00000414414 451 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 COX6CP10-201ENST00000416832 224 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 HMGN1P7-201ENST00000491722 313 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 AC097716.1-201ENST00000509136 180 ntTSL 2 BASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 AC107393.1-201ENST00000512403 346 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 RN7SKP164-201ENST00000516138 266 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 SNORA31.10-201ENST00000516482 106 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 RNU2-56P-201ENST00000516826 190 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-182P-201ENST00000516970 105 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP437-201ENST00000517249 129 ntBASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.12□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.121-201ENST00000363309 113 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.796-201ENST00000364268 102 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 snoU2_19.4-201ENST00000364329 80 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RNU4-41P-201ENST00000364426 143 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-923P-201ENST00000364753 107 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.799-201ENST00000364992 102 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 MIR616-201ENST00000385293 97 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP482-201ENST00000391269 118 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-493P-201ENST00000391321 108 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RN7SKP200-201ENST00000410564 320 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RNU2-7P-201ENST00000410794 178 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.793-201ENST00000411222 111 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 RPS29P11-201ENST00000496507 171 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 MIR514B-201ENST00000516774 80 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 AL021707.8-201ENST00000609428 183 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 AC004792.1-201ENST00000614523 137 ntBASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.11□□□□□ -2.07
PCDHA1Q9Y5I3 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.7-201ENST00000362352 102 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-1209P-201ENST00000363655 107 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-103P-201ENST00000363686 107 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.253-201ENST00000364562 112 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP138-201ENST00000365098 114 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-47P-201ENST00000383866 107 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.572-201ENST00000384757 98 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 MTND5P15-201ENST00000434246 349 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 RPS27P21-201ENST00000486977 252 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 AC072026.1-201ENST00000605023 201 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 SNORA28-201ENST00000606769 126 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 AL391903.3-201ENST00000612158 163 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 AL773524.1-201ENST00000614065 229 ntBASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
PCDHA1Q9Y5I3 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 RNA5SP276-201ENST00000362580 94 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 Y_RNA.229-201ENST00000364347 113 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 RNY3P5-201ENST00000384127 102 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 RNU6-360P-201ENST00000390944 104 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 HMGN2P38-201ENST00000423806 265 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 Z98949.2-201ENST00000440996 144 ntBASIC2.09□□□□□ -2.07
PCDHA1Q9Y5I3 RNU7-120P-201ENST00000459334 63 ntBASIC2.09□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 142.3 ms