Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RNU6-763P-201ENST00000390865 106 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 SNORA26.5-201ENST00000391215 123 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 TRMT112P2-201ENST00000512910 132 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 AC009831.4-201ENST00000620744 325 ntBASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.8□□□□□ -1.96
CCDC9Q9Y3X0 AC134026.1-201ENST00000623249 2239 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-1123P-201ENST00000362347 106 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-200P-201ENST00000364743 107 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-203P-201ENST00000384038 104 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 RNU2-14P-201ENST00000411053 191 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 BTF3P11-201ENST00000426582 477 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 AC099513.1-201ENST00000490423 301 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC2.79□□□□□ -1.96
CCDC9Q9Y3X0 UBE2WP1-201ENST00000362030 340 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 MIR518E-201ENST00000385252 88 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 MIR548M-201ENST00000408260 86 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 HMGN2P38-201ENST00000423806 265 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 MTND5P15-201ENST00000434246 349 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 AC090255.1-201ENST00000495779 349 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-138P-201ENST00000515952 107 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 RNU6-182P-201ENST00000516970 105 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 U2.14-201ENST00000615943 113 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 AL513423.1-201ENST00000621695 132 ntBASIC2.78□□□□□ -1.96
CCDC9Q9Y3X0 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 MIR424-201ENST00000362227 98 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.20-201ENST00000362479 113 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 SNORD68-201ENST00000363214 84 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 RNU4-41P-201ENST00000364426 143 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.785-201ENST00000384290 109 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 MIR548H3-201ENST00000408771 118 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 RNA5SP181-201ENST00000410246 98 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 SNORA36B-201ENST00000410438 131 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 PGBD4P5-201ENST00000445958 426 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 OR9P1P-201ENST00000496431 281 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 AC008834.1-201ENST00000511612 175 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-406P-201ENST00000516470 107 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.700-201ENST00000516806 100 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-111P-201ENST00000517179 105 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 AC012433.1-201ENST00000588916 398 ntBASIC2.77□□□□□ -1.97
CCDC9Q9Y3X0 RNY1P10-201ENST00000363268 113 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.116-201ENST00000363292 103 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.275-201ENST00000364726 110 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.416-201ENST00000384014 113 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 RNU4-52P-201ENST00000384209 138 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.555-201ENST00000384673 110 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 AC004965.1-201ENST00000413033 213 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 RPL30P13-201ENST00000418873 348 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 MAMDC2-AS1-203ENST00000420573 339 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 PIGPP3-201ENST00000425307 415 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 SNORD13-201ENST00000459299 104 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 AC079804.2-201ENST00000490376 200 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-789P-201ENST00000517105 102 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 AC095038.3-201ENST00000634439 195 ntBASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
CCDC9Q9Y3X0 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 ICE2P2-201ENST00000483823 2787 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-1205P-201ENST00000363625 106 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.217-201ENST00000364214 105 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.253-201ENST00000364562 112 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 RNA5SP190-201ENST00000365222 118 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.641-201ENST00000459414 105 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 RNA5SP182-201ENST00000516064 82 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 SNORA77B-201ENST00000578179 125 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 AL359821.1-201ENST00000605519 182 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 AL591926.4-201ENST00000616895 298 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 SNORD3E-202ENST00000627253 216 ntBASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 USP53-202ENST00000450251 6072 ntAPPRIS P1 TSL 5 BASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.75□□□□□ -1.97
CCDC9Q9Y3X0 MIR126-201ENST00000362291 85 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.203-201ENST00000364106 102 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 SNORA12.1-201ENST00000390873 148 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-437P-201ENST00000459408 95 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 AC005908.1-201ENST00000468701 347 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 HMGN1P7-201ENST00000491722 313 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.714-201ENST00000517065 90 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 SNORA81.3-201ENST00000517283 198 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 AC009779.6-201ENST00000603972 165 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 JPX_2.1-201ENST00000614161 69 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 AC013791.1-201ENST00000616619 62 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 MIR8063-201ENST00000621930 81 ntBASIC2.74□□□□□ -1.97
CCDC9Q9Y3X0 MIR6073-201ENST00000352083 89 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 SNORD27-201ENST00000363981 72 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-1289P-201ENST00000384431 106 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 MIR194-1-201ENST00000384892 85 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 CALM2P4-201ENST00000430810 426 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 HSPE1P24-201ENST00000450782 238 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 Y_RNA.637-201ENST00000459424 114 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 RNA5SP168-201ENST00000516642 112 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 U2.22-201ENST00000636441 106 ntBASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC2.73□□□□□ -1.97
CCDC9Q9Y3X0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC2.72□□□□□ -1.97
CCDC9Q9Y3X0 RNU6-338P-201ENST00000383888 105 ntBASIC2.72□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 86.7 ms