Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 RNA5SP481-201ENST00000516814 122 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 AP002392.1-201ENST00000537692 208 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 SNORA28-201ENST00000606769 126 ntBASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC2.23□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.121-201ENST00000363309 113 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6-103P-201ENST00000363686 107 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 RNA5SP109-201ENST00000391010 116 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 RNA5SP212-201ENST00000391223 107 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 HMGN2P19-201ENST00000425149 265 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 AC023449.1-201ENST00000454464 154 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 AC107393.1-201ENST00000512403 346 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 RNU6-1007P-201ENST00000516586 107 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 MIR514B-201ENST00000516774 80 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 Y_RNA.714-201ENST00000517065 90 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 MIR4448-201ENST00000584360 86 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 AC072026.1-201ENST00000605023 201 ntBASIC2.22□□□□□ -2.05
LIMCH1Q9UPQ0 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.7-201ENST00000362352 102 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 SNORA1B-201ENST00000362535 133 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.180-201ENST00000363867 113 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNU4-41P-201ENST00000364426 143 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-923P-201ENST00000364753 107 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-969P-201ENST00000383900 105 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-886P-201ENST00000384319 105 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-296P-201ENST00000384608 107 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNA5SP482-201ENST00000391269 118 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-493P-201ENST00000391321 108 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 RN7SKP200-201ENST00000410564 320 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 COX6CP10-201ENST00000416832 224 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 AL158823.1-201ENST00000418441 478 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 UBL5P3-201ENST00000475112 231 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 JPX_2.1-201ENST00000614161 69 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 MIR8054-201ENST00000620877 86 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 AC092881.1-201ENST00000638218 2733 ntBASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.21□□□□□ -2.06
LIMCH1Q9UPQ0 AC068700.1-201ENST00000565862 3754 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.150-201ENST00000363562 102 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-1062P-201ENST00000383908 107 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-1080P-201ENST00000383982 107 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 MIR616-201ENST00000385293 97 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-440P-201ENST00000390882 105 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-918P-201ENST00000391219 106 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-381P-201ENST00000391259 108 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNA5SP100-201ENST00000410903 110 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNA5SP59-201ENST00000410922 110 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNA5SP233-201ENST00000459153 113 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 HMGN1P7-201ENST00000491722 313 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 RNY3P16-201ENST00000516338 101 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 AL391903.3-201ENST00000612158 163 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 uc_338.20-201ENST00000621563 178 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.2□□□□□ -2.06
LIMCH1Q9UPQ0 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 RNU4-10P-201ENST00000364383 140 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 SNORA16.1-201ENST00000364597 132 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.265-201ENST00000364677 108 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-47P-201ENST00000383866 107 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 RNY3P5-201ENST00000384127 102 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-383P-201ENST00000410864 94 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 RN7SKP101-201ENST00000411376 320 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 AL606517.2-201ENST00000442855 241 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 ZNF702P-202ENST00000434269 1966 ntBASIC2.19□□□□□ -2.06
LIMCH1Q9UPQ0 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.238-201ENST00000364441 102 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.242-201ENST00000364473 110 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.253-201ENST00000364562 112 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 SNORA70B-201ENST00000384210 135 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.571-201ENST00000384753 98 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 AL034345.1-201ENST00000407768 123 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 MIR4308-201ENST00000580634 81 ntBASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC2.18□□□□□ -2.06
LIMCH1Q9UPQ0 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 MT-ATP8-201ENST00000361851 207 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-1209P-201ENST00000363655 107 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.796-201ENST00000364268 102 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.229-201ENST00000364347 113 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.233-201ENST00000364407 101 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 Y_RNA.799-201ENST00000364992 102 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-1228P-201ENST00000391014 107 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 RPL23AP63-201ENST00000498752 471 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 RPL23AP91-201ENST00000569211 455 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 AC087685.1-201ENST00000587507 141 ntBASIC2.17□□□□□ -2.06
LIMCH1Q9UPQ0 snoU2_19.4-201ENST00000364329 80 ntBASIC2.16□□□□□ -2.06
LIMCH1Q9UPQ0 RNU6-360P-201ENST00000390944 104 ntBASIC2.16□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms