Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 Y_RNA.486-201ENST00000384398 107 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 MIR29C-201ENST00000385231 88 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 AL359511.1-201ENST00000402970 211 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 AC007064.1-201ENST00000412238 351 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 NDUFA4P2-201ENST00000489989 244 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 RN7SKP282-201ENST00000516824 299 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 RNU6-1234P-201ENST00000516877 103 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 MIR1273D-201ENST00000577266 86 ntBASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 AGL-204ENST00000370161 6923 ntTSL 5 BASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.2□□□□□ -1.9
CCDC87Q9NVE4 CHORDC1-205ENST00000529726 4805 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 AC234781.5-201ENST00000508429 271 ntBASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.692-201ENST00000516627 105 ntBASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 AC090049.2-201ENST00000550377 109 ntBASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 HDX-206ENST00000506585 6158 ntTSL 2 BASIC3.19□□□□□ -1.9
CCDC87Q9NVE4 MAPK10-266ENST00000641066 6555 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 RNY1P11-201ENST00000363759 113 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 RNA5SP99-201ENST00000364020 114 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 SNORD56.5-201ENST00000364281 72 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 SNORD18B-201ENST00000365659 72 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 U8.9-201ENST00000365667 134 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 SNORA11.4-201ENST00000408823 129 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 AL049830.1-201ENST00000468034 425 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 CYCSP26-201ENST00000534107 320 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 AL365205.2-201ENST00000594586 68 ntBASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CCDC87Q9NVE4 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 MIR624-201ENST00000385217 97 ntBASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 LINC01203-202ENST00000456091 476 ntTSL 3 BASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 MRPS17P9-201ENST00000511924 393 ntBASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 VTRNA2-2P-201ENST00000516091 103 ntBASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 SNORA18.4-201ENST00000516440 124 ntBASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 RNU6-659P-201ENST00000516454 104 ntBASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 RNU6-56P-201ENST00000516986 93 ntBASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 MIR3169-201ENST00000578032 83 ntBASIC3.17□□□□□ -1.9
CCDC87Q9NVE4 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 MIR126-201ENST00000362291 85 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 SNORD114-1-201ENST00000362705 72 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 RNU6-862P-201ENST00000362804 105 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.66-201ENST00000362862 102 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 RNU6-23P-201ENST00000363283 107 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.353-201ENST00000365440 108 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 SNORD24-201ENST00000383884 75 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 Y_RNA.563-201ENST00000384707 108 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 RNA5SP127-201ENST00000411051 133 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 FTH1P12-201ENST00000432137 551 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 RN7SL499P-201ENST00000481141 276 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 AL163195.1-201ENST00000496941 348 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 AC004148.1-201ENST00000571506 398 ntTSL 5 BASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 AC008507.4-201ENST00000585464 127 ntBASIC3.16□□□□□ -1.9
CCDC87Q9NVE4 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 RNU6-1164P-201ENST00000364428 107 ntBASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 5S_rRNA.2-201ENST00000391293 112 ntBASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 CYCSP49-201ENST00000420810 319 ntBASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 Y_RNA.686-201ENST00000516548 134 ntBASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 AC005786.1-201ENST00000588553 154 ntBASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 TXLNGY-201ENST00000253320 7299 ntTSL 2 BASIC3.15□□□□□ -1.91
CCDC87Q9NVE4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 SNORA1B-201ENST00000362535 133 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 Y_RNA.81-201ENST00000362997 102 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 RNU6-1336P-201ENST00000383886 109 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 SNORA12.1-201ENST00000390873 148 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 AL603914.1-201ENST00000401964 204 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 AL135790.1-201ENST00000427161 157 ntTSL 3 BASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 RNU7-26P-201ENST00000458980 63 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 RNU7-28P-201ENST00000516759 62 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 AL591926.4-201ENST00000616895 298 ntBASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 WARS-244ENST00000627608 123 ntTSL 5 BASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.14□□□□□ -1.91
CCDC87Q9NVE4 SNORA33-201ENST00000363664 130 ntBASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 SNORA38-201ENST00000363946 132 ntBASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 RNU6-1292P-201ENST00000383856 107 ntBASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP210-201ENST00000391034 120 ntBASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 AC012413.1-201ENST00000521294 519 ntTSL 2 BASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 AC103810.6-201ENST00000606708 136 ntBASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 AC046143.2-201ENST00000609789 160 ntBASIC3.13□□□□□ -1.91
CCDC87Q9NVE4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 RNU1-58P-201ENST00000362413 163 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 U8.1-201ENST00000362843 134 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 RNU6-888P-201ENST00000363010 101 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP456-201ENST00000364002 114 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 MIR522-201ENST00000385071 87 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 MIR181B1-201ENST00000385240 110 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 RNA5SP247-201ENST00000411181 105 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 MTATP6P21-201ENST00000440681 189 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 RN7SL297P-201ENST00000483161 293 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 SNORA31.26-201ENST00000517250 137 ntBASIC3.12□□□□□ -1.91
CCDC87Q9NVE4 AC007751.1-201ENST00000529260 376 ntBASIC3.12□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms