Protein–RNA interactions for Protein: Q9NQT5

EXOSC3, Exosome complex component RRP40, humanhuman

Known RBP Predictions only

Length 275 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC3Q9NQT5 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 U8.7-201ENST00000364940 136 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 SNORD50B-201ENST00000364995 70 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.327-201ENST00000365201 102 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.336-201ENST00000365307 109 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.456-201ENST00000384232 111 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 MIR618-201ENST00000385287 98 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-131P-201ENST00000391144 107 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.602-201ENST00000410535 92 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 RPL39P39-201ENST00000455840 151 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 HMGN1P10-201ENST00000474557 553 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 AC087343.1-201ENST00000477341 475 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 SNORD111.1-201ENST00000516421 86 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 SNORA70.22-201ENST00000517160 124 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 AL357312.1-201ENST00000603879 298 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 AC104695.3-201ENST00000604052 296 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 RAC1P9-201ENST00000604990 392 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 AL096861.1-201ENST00000610899 123 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 AC027335.2-201ENST00000624030 375 ntBASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
EXOSC3Q9NQT5 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 C9orf84-204ENST00000394777 4955 ntAPPRIS ALT2 TSL 1 (best) BASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.61-201ENST00000362835 102 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.138-201ENST00000363462 102 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 SNORD113-8-201ENST00000363497 74 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-392P-201ENST00000364926 101 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.363-201ENST00000365529 113 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 SNORA22-201ENST00000383907 134 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.460-201ENST00000384255 102 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-102P-201ENST00000384485 104 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 SNORA22C-201ENST00000384614 134 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 MIR452-201ENST00000385020 85 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-823P-201ENST00000391042 103 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 AC245047.7-201ENST00000440265 293 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 LINC01399-202ENST00000458450 244 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 RPL23AP54-201ENST00000495129 419 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 SEPT14P8-201ENST00000508026 178 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 RNU7-115P-201ENST00000516433 55 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 RNA5SP404-201ENST00000517118 132 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 MIR4300-201ENST00000581016 96 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 SNORD114-21-201ENST00000606412 72 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 AC103810.9-201ENST00000606688 112 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 SNORD113-5-201ENST00000607261 78 ntBASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.94□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.28-201ENST00000362554 111 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.203-201ENST00000364106 102 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.389-201ENST00000383924 113 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.535-201ENST00000384612 99 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 RNU2-14P-201ENST00000411053 191 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-1054P-201ENST00000411293 104 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.631-201ENST00000459607 101 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 OR2A41P-201ENST00000473586 105 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 SNORA31.4-201ENST00000516049 129 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 RNU7-116P-201ENST00000516940 62 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.715-201ENST00000517082 110 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 AC090142.3-201ENST00000519012 385 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 MIR3192-201ENST00000584920 77 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 AP003357.1-201ENST00000604497 148 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 AL359821.1-201ENST00000605519 182 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 MIR376A1-201ENST00000616574 68 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 MIR548AY-201ENST00000617669 107 ntBASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.93□□□□□ -2.26
EXOSC3Q9NQT5 AC134026.1-201ENST00000623249 2239 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 RNU4-38P-201ENST00000364472 129 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 snoU2-30.1-201ENST00000365012 70 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-53P-201ENST00000365367 106 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 MIR1278-201ENST00000408753 81 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 snoU13.25-201ENST00000458945 104 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-897P-201ENST00000517135 105 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 AC127455.1-201ENST00000565496 145 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 MIR4498-201ENST00000577599 66 ntBASIC0.92□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.105-201ENST00000363182 111 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.216-201ENST00000364205 93 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 SNORA22B-201ENST00000383876 138 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 Y_RNA.418-201ENST00000384029 102 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-101P-201ENST00000410323 104 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 AL603825.1-201ENST00000438481 80 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 HSPE1P25-201ENST00000455484 251 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 RNU7-141P-201ENST00000459304 62 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 SNORA18.7-201ENST00000516910 131 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-988P-201ENST00000519081 107 ntBASIC0.91□□□□□ -2.26
EXOSC3Q9NQT5 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
EXOSC3Q9NQT5 RNU6-1209P-201ENST00000363655 107 ntBASIC0.9□□□□□ -2.27
EXOSC3Q9NQT5 Y_RNA.183-201ENST00000363882 113 ntBASIC0.9□□□□□ -2.27
EXOSC3Q9NQT5 RNU6-801P-201ENST00000364087 105 ntBASIC0.9□□□□□ -2.27
EXOSC3Q9NQT5 SNORA63.7-201ENST00000365579 123 ntBASIC0.9□□□□□ -2.27
EXOSC3Q9NQT5 AC117470.1-201ENST00000381974 330 ntBASIC0.9□□□□□ -2.27
EXOSC3Q9NQT5 SNORA72.4-201ENST00000384174 132 ntBASIC0.9□□□□□ -2.27
EXOSC3Q9NQT5 MIR136-201ENST00000385207 82 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 145.7 ms