Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 RNA5SP109-201ENST00000391010 116 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 RNU6-101P-201ENST00000410323 104 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.93□□□□□ -2.26
CDX2Q99626 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.93□□□□□ -2.26
CDX2Q99626 AC074290.1-201ENST00000448883 135 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 AL163195.1-201ENST00000496941 348 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 MRPS35P2-201ENST00000508242 191 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 MTND1P19-201ENST00000511780 315 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 Y_RNA.680-201ENST00000516441 93 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 RNU7-4P-201ENST00000516961 62 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.93□□□□□ -2.26
CDX2Q99626 AC023442.1-201ENST00000531247 422 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 MIR3145-201ENST00000580727 82 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 MIR4503-201ENST00000582187 83 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 AL365434.2-201ENST00000607979 234 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 AC010999.1-201ENST00000611856 324 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 AC021506.2-201ENST00000612354 169 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 MIR2909-201ENST00000617113 69 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 AL627230.5-201ENST00000619807 58 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC0.93□□□□□ -2.26
CDX2Q99626 Y_RNA.19-201ENST00000362462 99 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 Y_RNA.124-201ENST00000363339 93 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNU6-626P-201ENST00000363354 107 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 U3.8-201ENST00000363675 217 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 Y_RNA.179-201ENST00000363844 90 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 Y_RNA.446-201ENST00000384178 104 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNU6-472P-201ENST00000384299 107 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNY3P4-201ENST00000384428 101 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 snosnR66.1-201ENST00000391095 99 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNU6-1109P-201ENST00000391187 107 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.92□□□□□ -2.26
CDX2Q99626 MIR1185-2-201ENST00000408687 86 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 MIR1252-201ENST00000408861 65 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNU6-651P-201ENST00000411040 105 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC0.92□□□□□ -2.26
CDX2Q99626 AC008134.1-201ENST00000420943 193 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC0.92□□□□□ -2.26
CDX2Q99626 AC005002.2-201ENST00000438228 269 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 PCNPP5-201ENST00000452246 481 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 SNORA40.14-201ENST00000516543 86 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNU6-635P-201ENST00000516651 102 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNU6-307P-201ENST00000516743 106 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 RNU6-570P-201ENST00000517051 105 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 AC027419.1-201ENST00000522976 328 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 AC018448.1-201ENST00000552843 316 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 MIR4300-201ENST00000581016 96 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 AL929325.1-201ENST00000603096 117 ntBASIC0.92□□□□□ -2.26
CDX2Q99626 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.92□□□□□ -2.26
CDX2Q99626 Y_RNA.27-201ENST00000362540 103 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Y_RNA.47-201ENST00000362697 108 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Y_RNA.145-201ENST00000363527 102 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RNU6-770P-201ENST00000363929 105 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Y_RNA.280-201ENST00000364765 112 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RNU6-1240P-201ENST00000365155 104 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Y_RNA.376-201ENST00000365638 108 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Y_RNA.424-201ENST00000384063 103 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RNU6-793P-201ENST00000384233 104 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Y_RNA.541-201ENST00000384640 113 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RNU6-1031P-201ENST00000384773 107 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 MIR513A1-201ENST00000385138 129 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 AL355796.1-201ENST00000406706 323 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 MIR320B2-201ENST00000408479 138 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Y_RNA.602-201ENST00000410535 92 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 COX6CP10-201ENST00000416832 224 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RAB28P5-201ENST00000427490 651 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 MTND3P2-201ENST00000438452 342 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RNY3P15-201ENST00000516297 97 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RNU6-1045P-201ENST00000516321 107 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 RNU6-107P-201ENST00000516643 102 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 AC144568.1-201ENST00000520139 137 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.91□□□□□ -2.26
CDX2Q99626 AL117187.1-201ENST00000555482 181 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 CYP3A52P-201ENST00000563326 91 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 MIR3937-201ENST00000580135 106 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 AC006504.6-201ENST00000590142 199 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 AC004467.1-201ENST00000615678 330 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 Six3os1_7.1-201ENST00000621512 201 ntBASIC0.91□□□□□ -2.26
CDX2Q99626 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
CDX2Q99626 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
CDX2Q99626 Y_RNA.193-201ENST00000363979 102 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 SNORA22-201ENST00000383907 134 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 Y_RNA.412-201ENST00000384001 104 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 SNORA22C-201ENST00000384614 134 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 Y_RNA.551-201ENST00000384661 102 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 Y_RNA.574-201ENST00000384766 95 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 MIR628-201ENST00000385229 95 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 SNORD115-46-201ENST00000390982 71 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 UQCRBP2-201ENST00000447827 297 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 FCF1P4-201ENST00000448326 183 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 HSPE1P25-201ENST00000455484 251 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 RNU6-625P-201ENST00000459412 107 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 RNU6-475P-201ENST00000516073 104 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 RNU7-40P-201ENST00000516397 64 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 Y_RNA.683-201ENST00000516508 93 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 RNU6-165P-201ENST00000517170 99 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 CYCSP23-201ENST00000519781 313 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 RPL21P9-201ENST00000556149 474 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 MIR4643-201ENST00000577473 78 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 MIR3664-201ENST00000579074 99 ntBASIC0.9□□□□□ -2.27
CDX2Q99626 MIR4423-201ENST00000580922 80 ntBASIC0.9□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms