Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 Y_RNA.570-201ENST00000384750 101 ntBASIC0.7□□□□□ -2.3
VPS35Q96QK1 TRAJ22-201ENST00000390515 63 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
VPS35Q96QK1 MIR548J-201ENST00000408833 112 ntBASIC0.7□□□□□ -2.3
VPS35Q96QK1 AL035398.1-201ENST00000430869 322 ntBASIC0.7□□□□□ -2.3
VPS35Q96QK1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.7□□□□□ -2.3
VPS35Q96QK1 AC005042.3-201ENST00000453230 174 ntBASIC0.7□□□□□ -2.3
VPS35Q96QK1 AC006600.1-201ENST00000572529 153 ntBASIC0.7□□□□□ -2.3
VPS35Q96QK1 AL353765.1-201ENST00000605514 183 ntBASIC0.7□□□□□ -2.3
VPS35Q96QK1 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.7□□□□□ -2.3
VPS35Q96QK1 MIR6835-201ENST00000621552 64 ntBASIC0.7□□□□□ -2.3
VPS35Q96QK1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.7□□□□□ -2.3
VPS35Q96QK1 RNU6-1335P-201ENST00000365426 107 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 RNU6-1040P-201ENST00000383974 107 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 RNY4P36-201ENST00000391116 96 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 RPS26P5-201ENST00000418544 335 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.69□□□□□ -2.3
VPS35Q96QK1 RNU6-699P-201ENST00000517081 110 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 MIR151B-201ENST00000584249 96 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 VN1R91P-201ENST00000594377 169 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 AC104465.1-201ENST00000611365 139 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 AL355073.2-201ENST00000612106 557 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 AC068700.1-201ENST00000565862 3754 ntBASIC0.69□□□□□ -2.3
VPS35Q96QK1 AC023934.1-201ENST00000574529 2389 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.68□□□□□ -2.3
VPS35Q96QK1 Y_RNA.341-201ENST00000365341 102 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 Y_RNA.387-201ENST00000383918 102 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 RNU6-1323P-201ENST00000384025 107 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 SNORD116-29-201ENST00000384516 83 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 RNU6ATAC31P-201ENST00000408513 126 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 MTND5P15-201ENST00000434246 349 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 SNORA20.3-201ENST00000516880 132 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 RNU7-116P-201ENST00000516940 62 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 MIR4423-201ENST00000580922 80 ntBASIC0.68□□□□□ -2.3
VPS35Q96QK1 SNORD14E-201ENST00000364009 85 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 Y_RNA.310-201ENST00000365063 113 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 Y_RNA.368-201ENST00000365547 113 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 AL590004.1-201ENST00000405321 300 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 RNU6-733P-201ENST00000410759 104 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 LINC01866-201ENST00000421181 201 ntTSL 3 BASIC0.67□□□□□ -2.3
VPS35Q96QK1 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.67□□□□□ -2.3
VPS35Q96QK1 DEFB108E-201ENST00000524692 240 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC0.67□□□□□ -2.3
VPS35Q96QK1 AC008133.2-201ENST00000624540 351 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 MIR4272-201ENST00000635924 64 ntBASIC0.67□□□□□ -2.3
VPS35Q96QK1 Y_RNA.331-201ENST00000365267 102 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 Y_RNA.456-201ENST00000384232 111 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 SNORD89-201ENST00000390981 114 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AC138393.2-201ENST00000414742 246 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 U7.7-201ENST00000459276 60 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AC117454.1-201ENST00000491120 168 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.66□□□□□ -2.3
VPS35Q96QK1 RNU6-277P-201ENST00000516272 106 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AC133485.1-201ENST00000567176 124 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AC138907.6-201ENST00000568401 126 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.66□□□□□ -2.3
VPS35Q96QK1 POLR3GP1-201ENST00000594073 261 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AL590095.2-201ENST00000604136 117 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 RNU6-94P-201ENST00000607728 107 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AC099654.14-201ENST00000638599 341 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 AC134026.1-201ENST00000623249 2239 ntBASIC0.66□□□□□ -2.3
VPS35Q96QK1 Y_RNA.116-201ENST00000363292 103 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 Y_RNA.142-201ENST00000363491 102 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 Y_RNA.203-201ENST00000364106 102 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 Y_RNA.428-201ENST00000384078 102 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 MIR508-201ENST00000384857 115 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AC091951.2-201ENST00000500762 203 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AC113410.1-201ENST00000505029 247 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 RNU11-2P-201ENST00000516898 142 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 Y_RNA.718-201ENST00000517110 102 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AC024405.2-202ENST00000532731 184 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AC093027.1-201ENST00000546698 429 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AC005730.3-201ENST00000583067 366 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 DEFB117-201ENST00000602356 141 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AP003357.1-201ENST00000604497 148 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AC007742.2-201ENST00000618226 398 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 7SK.10-201ENST00000621414 298 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.65□□□□□ -2.31
VPS35Q96QK1 MIR4251-201ENST00000635819 61 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 MIR1302-1-201ENST00000637932 143 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 AL442644.1-201ENST00000454390 3105 ntBASIC0.65□□□□□ -2.31
VPS35Q96QK1 Y_RNA.384-201ENST00000383909 102 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 Y_RNA.463-201ENST00000384271 102 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 SNORD38C-201ENST00000384381 69 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 RNU6-110P-201ENST00000384508 104 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 RNU6ATAC20P-201ENST00000408436 127 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 RNU6-994P-201ENST00000410507 111 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.64□□□□□ -2.31
VPS35Q96QK1 AC067940.1-201ENST00000458411 300 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 RPL23AP54-201ENST00000495129 419 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.64□□□□□ -2.31
VPS35Q96QK1 RNU6-1223P-201ENST00000517124 104 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 SNORD116.3-201ENST00000517176 78 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 AC036111.3-201ENST00000526389 112 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 MIR4714-201ENST00000580728 77 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 AC025627.3-201ENST00000582078 182 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 AC087685.1-201ENST00000587507 141 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 JPX_2.1-201ENST00000614161 69 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 AC010205.1-201ENST00000616668 449 ntBASIC0.64□□□□□ -2.31
VPS35Q96QK1 Y_RNA.148-201ENST00000363557 117 ntBASIC0.63□□□□□ -2.31
VPS35Q96QK1 Y_RNA.462-201ENST00000384268 102 ntBASIC0.63□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 164.9 ms