Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC140Q96MF4 LINC01766-201ENST00000453968 362 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC140Q96MF4 AC093850.1-201ENST00000454121 251 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 snoU13.27-201ENST00000459278 104 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 RNU6-479P-201ENST00000516348 105 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 MIR8057-201ENST00000620957 69 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 AC008264.2-201ENST00000610193 3731 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 MTND5P32-201ENST00000560711 1802 ntBASIC2.37□□□□□ -2.03
CCDC140Q96MF4 TDRD15-201ENST00000405799 6135 ntAPPRIS P1 TSL 2 BASIC2.37□□□□□ -2.03
CCDC140Q96MF4 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC140Q96MF4 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC140Q96MF4 GABRA2-209ENST00000510861 3411 ntAPPRIS P1 TSL 5 BASIC2.36□□□□□ -2.03
CCDC140Q96MF4 SNORD115-28-201ENST00000363931 81 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 SNORD38C-201ENST00000384381 69 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 RNU6-1168P-201ENST00000390831 104 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 MIR891A-201ENST00000401237 79 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 SNORD23.1-201ENST00000408212 104 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 RNA5SP100-201ENST00000410903 110 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 RNA5SP59-201ENST00000410922 110 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC140Q96MF4 RNA5SP481-201ENST00000516814 122 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 5S_rRNA.3-201ENST00000517021 110 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 AC004486.1-201ENST00000546846 233 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 5S_rRNA.19-201ENST00000612131 110 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 AC245884.12-201ENST00000615364 59 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 AC134878.1-201ENST00000619901 243 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 5S_rRNA.18-201ENST00000621941 110 ntBASIC2.36□□□□□ -2.03
CCDC140Q96MF4 PLD1-217ENST00000627725 174 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC140Q96MF4 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC140Q96MF4 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC140Q96MF4 RNA5SP374-201ENST00000362939 125 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 Y_RNA.127-201ENST00000363386 109 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 RNU6-80P-201ENST00000384195 107 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 RNU6-424P-201ENST00000384367 105 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 MIR128-1-201ENST00000384921 82 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 MIR524-201ENST00000385242 87 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 RNA5SP274-201ENST00000410484 108 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 RN7SL75P-201ENST00000461926 281 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC2.35□□□□□ -2.03
CCDC140Q96MF4 RNU2-60P-201ENST00000517290 128 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.35□□□□□ -2.03
CCDC140Q96MF4 AC021506.2-201ENST00000612354 169 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 AC027279.3-201ENST00000625055 122 ntBASIC2.35□□□□□ -2.03
CCDC140Q96MF4 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC140Q96MF4 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC140Q96MF4 NAALADL2-203ENST00000454872 9865 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC140Q96MF4 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
CCDC140Q96MF4 SLC6A15-202ENST00000309283 3108 ntTSL 5 BASIC2.35□□□□□ -2.03
CCDC140Q96MF4 AC131280.1-202ENST00000624067 4211 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.34□□□□□ -2.03
CCDC140Q96MF4 MIR22-201ENST00000362190 85 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 SUMO1P4-201ENST00000429430 302 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 AL445646.1-201ENST00000431784 216 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 RNU7-107P-201ENST00000459121 61 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 AC055731.1-201ENST00000474387 401 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 AC008885.1-201ENST00000514930 301 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 RNA5SP385-201ENST00000515947 110 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 RNU6-1149P-201ENST00000516810 97 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 SNORA31.17-201ENST00000516953 127 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 RNU2-19P-201ENST00000517288 84 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 AC135178.3-204ENST00000585181 451 ntTSL 2 BASIC2.34□□□□□ -2.03
CCDC140Q96MF4 AC007318.2-201ENST00000620999 243 ntBASIC2.34□□□□□ -2.03
CCDC140Q96MF4 POSTN-209ENST00000541179 3214 ntAPPRIS ALT2 TSL 1 (best) BASIC2.34□□□□□ -2.04
CCDC140Q96MF4 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.34□□□□□ -2.04
CCDC140Q96MF4 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC140Q96MF4 PIK3C2G-206ENST00000538779 4963 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC140Q96MF4 AC108206.1-201ENST00000570186 4159 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 ZNF732-201ENST00000419098 2193 ntAPPRIS P2 TSL 2 BASIC2.33□□□□□ -2.04
CCDC140Q96MF4 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
CCDC140Q96MF4 TAB3-203ENST00000378930 6255 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
CCDC140Q96MF4 AC093831.2-201ENST00000624393 3427 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 Y_RNA.37-201ENST00000362606 108 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 RNU6-1290P-201ENST00000362957 109 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 Y_RNA.114-201ENST00000363265 113 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 SNORD116-14-201ENST00000383894 92 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 SNORD116-17-201ENST00000383929 92 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 RNU6-1189P-201ENST00000383958 107 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 SNORD116-15-201ENST00000384445 92 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 Y_RNA.525-201ENST00000384570 113 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 SNORD116-19-201ENST00000384729 92 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 AL603914.1-201ENST00000401964 204 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 AC015922.2-201ENST00000435593 184 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 RN7SL633P-201ENST00000488974 297 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC140Q96MF4 SNORD36C-201ENST00000516733 66 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 MIR4778-201ENST00000577635 80 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 MIR3121-201ENST00000579680 77 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 MIR4506-201ENST00000584693 77 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 AL359881.1-201ENST00000602916 267 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 COMMD6-213ENST00000626103 120 ntTSL 5 BASIC2.33□□□□□ -2.04
CCDC140Q96MF4 SCARNA15.3-201ENST00000626315 122 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 SCARNA4.1-201ENST00000628597 123 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 MIR376A2-201ENST00000636782 80 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 AL365361.1-201ENST00000566942 3481 ntBASIC2.33□□□□□ -2.04
CCDC140Q96MF4 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.32□□□□□ -2.04
CCDC140Q96MF4 KIAA0825-203ENST00000513200 4942 ntTSL 5 BASIC2.32□□□□□ -2.04
CCDC140Q96MF4 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
CCDC140Q96MF4 RNA5SP393-201ENST00000363423 117 ntBASIC2.32□□□□□ -2.04
CCDC140Q96MF4 SNORA67.1-201ENST00000364749 141 ntBASIC2.32□□□□□ -2.04
CCDC140Q96MF4 SNORA2.2-201ENST00000365473 135 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 118.7 ms