Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MTND1P14-201ENST00000427400 950 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 AC245047.8-201ENST00000456455 284 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 UBL5P1-201ENST00000507979 193 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 SNORD111.1-201ENST00000516421 86 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 SNORD45.4-201ENST00000516629 73 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 AC136628.3-201ENST00000521868 290 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 AC024405.2-202ENST00000532731 184 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 AC136932.1-201ENST00000574771 208 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 POLR3GP1-201ENST00000594073 261 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 AL096861.1-201ENST00000610899 123 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 AC012676.2-201ENST00000619258 186 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.143-201ENST00000363520 106 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.183-201ENST00000363882 113 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.203-201ENST00000364106 102 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 RNU6-21P-201ENST00000384710 107 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 MIR136-201ENST00000385207 82 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 RNU6-131P-201ENST00000391144 107 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.645-201ENST00000391229 102 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 AL590004.1-201ENST00000405321 300 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 SNRPGP10-201ENST00000432323 225 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 snoU13.25-201ENST00000458945 104 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 AC010655.3-201ENST00000478818 450 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 RPS26P48-201ENST00000491713 339 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 SNORA74.3-201ENST00000517108 154 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 AC090142.3-201ENST00000519012 385 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 MIR548AY-201ENST00000617669 107 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 AL160413.1-201ENST00000622780 310 ntBASIC0.8□□□□□ -2.28
RPUSD4Q96CM3 MIR378A-201ENST00000362177 66 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.28-201ENST00000362554 111 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 SNORD50B-201ENST00000364995 70 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.383-201ENST00000383855 97 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.445-201ENST00000384168 102 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 SNORD115-46-201ENST00000390982 71 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 BTF3P4-201ENST00000418852 495 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 AC063976.4-201ENST00000421971 163 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 RNU6-830P-201ENST00000516353 107 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 RNU7-43P-201ENST00000516554 64 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.721-201ENST00000517207 102 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 SNORD114-21-201ENST00000606412 72 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 AC090574.1-201ENST00000623186 233 ntBASIC0.79□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.148-201ENST00000363557 117 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 RNA5SP99-201ENST00000364020 114 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.276-201ENST00000364732 109 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 U8.7-201ENST00000364940 136 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.380-201ENST00000365663 111 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.424-201ENST00000384063 103 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 SNORA72.4-201ENST00000384174 132 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.460-201ENST00000384255 102 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 RNU6-823P-201ENST00000391042 103 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 MIR1252-201ENST00000408861 65 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 RNU4-30P-201ENST00000410245 143 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 AP1B1P2-201ENST00000416196 106 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 SNRPGP14-201ENST00000435400 219 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 AC002429.1-201ENST00000437672 148 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 POLR2KP2-201ENST00000438155 177 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 RNU7-21P-201ENST00000459430 62 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 AC087343.1-201ENST00000477341 475 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.715-201ENST00000517082 110 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 MIR4300-201ENST00000581016 96 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 MIR2681-201ENST00000581814 105 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 MIR3192-201ENST00000584920 77 ntBASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
RPUSD4Q96CM3 AL391987.6-201ENST00000305671 199 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 MIR369-201ENST00000362155 70 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.31-201ENST00000362574 102 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.140-201ENST00000363474 103 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 RNU6-801P-201ENST00000364087 105 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.796-201ENST00000364268 102 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.242-201ENST00000364473 110 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.799-201ENST00000364992 102 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.419-201ENST00000384041 102 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 MIR200A-201ENST00000384875 90 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.631-201ENST00000459607 101 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 RNU6-496P-201ENST00000516145 99 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 RNU6-191P-201ENST00000516295 94 ntBASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.77□□□□□ -2.29
RPUSD4Q96CM3 RNU6-1084P-201ENST00000362498 107 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.128-201ENST00000363391 112 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 RNA5SP48-201ENST00000363969 126 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.286-201ENST00000364813 102 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 Y_RNA.418-201ENST00000384029 102 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 RNU6-474P-201ENST00000384243 107 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 MIR222-201ENST00000384992 110 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 HSPE1P25-201ENST00000455484 251 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 RNU7-141P-201ENST00000459304 62 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 RNU6-437P-201ENST00000459408 95 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 NDUFA4P2-201ENST00000489989 244 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 AC117454.1-201ENST00000491120 168 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 RPL23AP54-201ENST00000495129 419 ntBASIC0.76□□□□□ -2.29
RPUSD4Q96CM3 MIR3145-201ENST00000580727 82 ntBASIC0.76□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 177.8 ms