| APPL2 | Q8NEU8 | MIR522-201 | ENST00000385071 | 87 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AL451046.2-201 | ENST00000403074 | 277 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RNU6-322P-201 | ENST00000516010 | 103 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | Y_RNA.715-201 | ENST00000517082 | 110 nt | BASIC | 1.31 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | LRRIQ1-202 | ENST00000393217 | 5394 nt | APPRIS P1 TSL 1 (best) BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | Y_RNA.138-201 | ENST00000363462 | 102 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | MIR1287-201 | ENST00000408492 | 90 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AC024067.1-201 | ENST00000426199 | 223 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | SEPT14P8-201 | ENST00000508026 | 178 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | MIR4300-201 | ENST00000581016 | 96 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AP003357.1-201 | ENST00000604497 | 148 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | SNORD113-5-201 | ENST00000607261 | 78 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | LINC01068-202 | ENST00000620874 | 626 nt | TSL 3 BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AC134503.1-201 | ENST00000633048 | 54 nt | BASIC | 1.3 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | Y_RNA.222-201 | ENST00000364264 | 102 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RNU6-450P-201 | ENST00000364654 | 107 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | Y_RNA.383-201 | ENST00000383855 | 97 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | U8.19-201 | ENST00000459095 | 133 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AL133373.1-201 | ENST00000497098 | 94 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RNU6-397P-201 | ENST00000516226 | 104 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RNU7-116P-201 | ENST00000516940 | 62 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AC138625.2-201 | ENST00000563968 | 551 nt | TSL 3 BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RAC1P9-201 | ENST00000604990 | 392 nt | BASIC | 1.29 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | Y_RNA.183-201 | ENST00000363882 | 113 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | U8.7-201 | ENST00000364940 | 136 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | MIR1276-201 | ENST00000408707 | 83 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | MIR1252-201 | ENST00000408861 | 65 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RNU6-1054P-201 | ENST00000411293 | 104 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | Y_RNA.711-201 | ENST00000516993 | 102 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RNU6-897P-201 | ENST00000517135 | 105 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | RNU6-988P-201 | ENST00000519081 | 107 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AC024405.2-202 | ENST00000532731 | 184 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | FAM106DP-201 | ENST00000586416 | 501 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | POLR3GP1-201 | ENST00000594073 | 261 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | AC012676.2-201 | ENST00000619258 | 186 nt | BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | NAA50-211 | ENST00000630058 | 177 nt | TSL 5 BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | TPTE2-204 | ENST00000400103 | 1652 nt | TSL 5 BASIC | 1.28 | □□□□□ -2.2 | | |
| APPL2 | Q8NEU8 | SENP7-207 | ENST00000394095 | 4945 nt | APPRIS P3 TSL 1 (best) BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU4-80P-201 | ENST00000363200 | 141 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNORD113-8-201 | ENST00000363497 | 74 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNORA22B-201 | ENST00000383876 | 138 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNORD115-46-201 | ENST00000390982 | 71 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | POLR2KP2-201 | ENST00000438155 | 177 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU7-115P-201 | ENST00000516433 | 55 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC127455.1-201 | ENST00000565496 | 145 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AL357312.1-201 | ENST00000603879 | 298 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MIR376A1-201 | ENST00000616574 | 68 nt | BASIC | 1.27 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-797P-201 | ENST00000363101 | 109 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.336-201 | ENST00000365307 | 109 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-102P-201 | ENST00000384485 | 104 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MIR452-201 | ENST00000385020 | 85 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MIR548P-201 | ENST00000408336 | 84 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MIR1298-201 | ENST00000408783 | 112 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MLLT10P1-201 | ENST00000418346 | 262 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC048334.1-201 | ENST00000477975 | 159 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC117454.1-201 | ENST00000491120 | 168 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU4ATAC11P-201 | ENST00000515939 | 126 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNA5SP102-201 | ENST00000516865 | 106 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.721-201 | ENST00000517207 | 102 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AL022345.2-201 | ENST00000606307 | 135 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MIR6504-201 | ENST00000613520 | 61 nt | BASIC | 1.26 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.105-201 | ENST00000363182 | 111 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNORD50B-201 | ENST00000364995 | 70 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC117470.1-201 | ENST00000381974 | 330 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.389-201 | ENST00000383924 | 113 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.418-201 | ENST00000384029 | 102 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNORA25-201 | ENST00000384384 | 134 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-101P-201 | ENST00000410323 | 104 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MTCO2P12-201 | ENST00000427426 | 682 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNRPGP10-201 | ENST00000432323 | 225 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | HSPE1P25-201 | ENST00000455484 | 251 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNORA31.2-201 | ENST00000516019 | 134 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-496P-201 | ENST00000516145 | 99 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | SNORD45.4-201 | ENST00000516629 | 73 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNA5SP404-201 | ENST00000517118 | 132 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC136628.3-201 | ENST00000521868 | 290 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC090821.2-201 | ENST00000523552 | 176 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC020661.2-201 | ENST00000560114 | 134 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | HSPE1P19-201 | ENST00000603327 | 295 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | BX284668.6-201 | ENST00000606899 | 438 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MIR548AY-201 | ENST00000617669 | 107 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC027335.2-201 | ENST00000624030 | 375 nt | BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MGAT4C-209 | ENST00000611864 | 25116 nt | APPRIS P1 TSL 5 BASIC | 1.25 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | ZNF415-224 | ENST00000601493 | 2132 nt | TSL 1 (best) BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | DENND4A-209 | ENST00000635620 | 5887 nt | TSL 5 BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-801P-201 | ENST00000364087 | 105 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.203-201 | ENST00000364106 | 102 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | TRAJ3-201 | ENST00000390534 | 62 nt | APPRIS P1 BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-131P-201 | ENST00000391144 | 107 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6ATAC19P-201 | ENST00000408096 | 110 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-121P-201 | ENST00000410525 | 99 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU2-14P-201 | ENST00000411053 | 191 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | AC245047.7-201 | ENST00000440265 | 293 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RPL23AP54-201 | ENST00000495129 | 419 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-947P-201 | ENST00000516264 | 106 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-191P-201 | ENST00000516295 | 94 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | MIR4295-201 | ENST00000585286 | 85 nt | BASIC | 1.24 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | RNU6-1048P-201 | ENST00000364054 | 107 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.216-201 | ENST00000364205 | 93 nt | BASIC | 1.23 | □□□□□ -2.21 | | |
| APPL2 | Q8NEU8 | Y_RNA.380-201 | ENST00000365663 | 111 nt | BASIC | 1.23 | □□□□□ -2.21 | | |