Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 Y_RNA.599-201ENST00000410489 109 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 MTND1P2-201ENST00000430604 821 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 SNORD123-201ENST00000459473 70 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 AC004812.1-201ENST00000540773 146 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 RBM11P1-201ENST00000604951 799 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 AC022441.3-201ENST00000605737 136 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 AC022306.2-201ENST00000617563 647 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 U2.1-201ENST00000618978 145 ntBASIC0.59□□□□□ -2.31
TRIM40Q6P9F5 AL442644.1-201ENST00000454390 3105 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 HSBP1P2-201ENST00000299671 229 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 RNU6-1335P-201ENST00000365426 107 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 RNU6-876P-201ENST00000391295 104 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 RNU6-1304P-201ENST00000411374 106 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 SNRPGP10-201ENST00000432323 225 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 U7.7-201ENST00000459276 60 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 AC113410.1-201ENST00000505029 247 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.714-201ENST00000517065 90 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.58□□□□□ -2.32
TRIM40Q6P9F5 AC023934.1-201ENST00000574529 2389 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 AC068700.1-201ENST00000565862 3754 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.314-201ENST00000365114 102 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 RNU6-110P-201ENST00000384508 104 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 MIR92A1-201ENST00000385233 78 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 RNU6ATAC25P-201ENST00000408798 117 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 RNU6-710P-201ENST00000410424 105 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 MCFD2P1-201ENST00000417812 300 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 MTCO3P10-201ENST00000455912 772 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.653-201ENST00000459091 95 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 RNU11-2P-201ENST00000516898 142 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 AC025627.3-201ENST00000582078 182 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 AC133104.2-201ENST00000615272 193 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 U6atac.1-201ENST00000616025 117 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 AC139792.2-201ENST00000624218 587 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 AC138305.3-201ENST00000624988 240 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 U6.92-201ENST00000636464 89 ntBASIC0.57□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.27-201ENST00000362540 103 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.118-201ENST00000363300 101 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.329-201ENST00000365209 107 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.474-201ENST00000384341 102 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 RNU6-855P-201ENST00000410395 104 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 AC099799.1-201ENST00000439809 192 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 COX6CP6-201ENST00000490840 228 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 RNU6-559P-201ENST00000516151 98 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 RN7SKP295-201ENST00000517264 153 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 AC113139.1-201ENST00000605049 239 ntBASIC0.56□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.248-201ENST00000364501 109 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 RNU1-133P-201ENST00000364867 167 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.368-201ENST00000365547 113 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 RNU6-1323P-201ENST00000384025 107 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 RNU6-708P-201ENST00000384217 107 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 MIR559-201ENST00000385188 96 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 SNORD89-201ENST00000390981 114 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 AL392103.1-201ENST00000447000 198 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 AC005042.3-201ENST00000453230 174 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 RNU6-1110P-201ENST00000516462 101 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 RNU7-116P-201ENST00000516940 62 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 AC025253.1-201ENST00000613623 543 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 MIR6515-201ENST00000619843 57 ntBASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.55□□□□□ -2.32
TRIM40Q6P9F5 AC134026.1-201ENST00000623249 2239 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 RNU6-490P-201ENST00000362985 107 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 RNU6-1175P-201ENST00000365200 107 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.570-201ENST00000384750 101 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 SNORD111-201ENST00000408139 94 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 SNORD99-201ENST00000408612 74 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 AC098869.1-201ENST00000481627 292 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 AC036111.3-201ENST00000526389 112 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 AP003484.1-201ENST00000530974 250 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 RNU6-94P-201ENST00000607728 107 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 AC092794.1-201ENST00000612734 582 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 AC007742.2-201ENST00000618226 398 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 7SK.10-201ENST00000621414 298 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 AC008133.2-201ENST00000624540 351 ntBASIC0.54□□□□□ -2.32
TRIM40Q6P9F5 SNORD14E-201ENST00000364009 85 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.310-201ENST00000365063 113 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 Y_RNA.341-201ENST00000365341 102 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 MIR1302-7-201ENST00000408841 72 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 AC096644.2-201ENST00000429278 159 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 AC067940.1-201ENST00000458411 300 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 RNA5SP436-201ENST00000516020 115 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 VN1R91P-201ENST00000594377 169 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 MIR4251-201ENST00000635819 61 ntBASIC0.53□□□□□ -2.32
TRIM40Q6P9F5 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.203-201ENST00000364106 102 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 RNY1-201ENST00000364228 113 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 Y_RNA.456-201ENST00000384232 111 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 SNORD38C-201ENST00000384381 69 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 MIR489-201ENST00000384923 84 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 RNU6-994P-201ENST00000410507 111 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 RNU6-1132P-201ENST00000459214 107 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 AC093027.1-201ENST00000546698 429 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 MIR4423-201ENST00000580922 80 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 MIR548AR-201ENST00000582191 57 ntBASIC0.52□□□□□ -2.33
TRIM40Q6P9F5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.52□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 110.7 ms