Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.65□□□□□ -2.15
COL28A1Q2UY09 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL28A1Q2UY09 MIR424-201ENST00000362227 98 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 SNORA7.1-201ENST00000363750 139 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 RNU6-203P-201ENST00000384038 104 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 RNU6-136P-201ENST00000384663 107 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 RPL30P13-201ENST00000418873 348 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 MTATP8P1-201ENST00000467115 207 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 RNU6-1045P-201ENST00000516321 107 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.64□□□□□ -2.15
COL28A1Q2UY09 AC073349.3-201ENST00000617616 186 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 MIR8062-201ENST00000621515 85 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 AC091895.1-201ENST00000624494 256 ntBASIC1.64□□□□□ -2.15
COL28A1Q2UY09 UGP2-230ENST00000626380 276 ntTSL 5 BASIC1.64□□□□□ -2.15
COL28A1Q2UY09 AC068733.3-201ENST00000632757 269 ntTSL 3 BASIC1.64□□□□□ -2.15
COL28A1Q2UY09 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.64□□□□□ -2.15
COL28A1Q2UY09 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.64□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.176-201ENST00000363815 109 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 RNU1-42P-201ENST00000364033 160 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.265-201ENST00000364677 108 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 SNORA72.4-201ENST00000384174 132 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 MTND2P23-201ENST00000422990 651 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 AC104332.1-201ENST00000440471 797 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 STAG3L5P-204ENST00000443759 179 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 AL049830.1-201ENST00000468034 425 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 OR9P1P-201ENST00000496431 281 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 RNU7-115P-201ENST00000516433 55 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 MIR4419B-201ENST00000577260 68 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 SNORD53B-201ENST00000577887 78 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 MIR4255-201ENST00000579351 72 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 U6.104-201ENST00000637979 90 ntBASIC1.63□□□□□ -2.15
COL28A1Q2UY09 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.63□□□□□ -2.15
COL28A1Q2UY09 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.62□□□□□ -2.15
COL28A1Q2UY09 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.62□□□□□ -2.15
COL28A1Q2UY09 MIR302D-201ENST00000362275 68 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 SNORA25.1-201ENST00000362326 128 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.178-201ENST00000363832 102 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 RNU6-801P-201ENST00000364087 105 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.459-201ENST00000384251 102 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.62□□□□□ -2.15
COL28A1Q2UY09 AC233266.1-201ENST00000454518 96 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 snoU13.9-201ENST00000458927 103 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 TRBVB-201ENST00000477100 408 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 SERF1AP1-201ENST00000514575 187 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 RNU6-1338P-201ENST00000516328 91 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 AC127455.1-201ENST00000565496 145 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 AC015688.6-201ENST00000577737 104 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 AC242852.1-201ENST00000612151 96 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 AC244015.1-201ENST00000622301 99 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 AC068647.2-201ENST00000637380 353 ntBASIC1.62□□□□□ -2.15
COL28A1Q2UY09 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.62□□□□□ -2.15
COL28A1Q2UY09 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.61□□□□□ -2.15
COL28A1Q2UY09 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC1.61□□□□□ -2.15
COL28A1Q2UY09 UBE2WP1-201ENST00000362030 340 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.149-201ENST00000363558 117 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 RNU6-338P-201ENST00000383888 105 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 RNU6-514P-201ENST00000384208 107 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 RNU6-1105P-201ENST00000384774 107 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 MIR598-201ENST00000384868 97 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.61□□□□□ -2.15
COL28A1Q2UY09 RNU1-92P-201ENST00000517017 135 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 AC008269.2-201ENST00000561915 1105 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 MIR4762-201ENST00000585261 75 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 POLR3GP1-201ENST00000594073 261 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.61□□□□□ -2.15
COL28A1Q2UY09 MIR548AY-201ENST00000617669 107 ntBASIC1.61□□□□□ -2.15
COL28A1Q2UY09 MIR335-201ENST00000362173 94 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.133-201ENST00000363428 110 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 U8.5-201ENST00000364528 136 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.354-201ENST00000365448 111 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.376-201ENST00000365638 108 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 RNU6-424P-201ENST00000384367 105 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 MIR660-201ENST00000385235 97 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 Z98949.2-201ENST00000440996 144 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 AC005908.1-201ENST00000468701 347 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 AC091959.1-201ENST00000495857 238 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 MTCO2P24-201ENST00000515611 426 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 SNORA27.4-201ENST00000516650 95 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 AC024405.2-202ENST00000532731 184 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 AL161670.1-201ENST00000554348 137 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 MIR3618-201ENST00000580330 88 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 AL512605.2-201ENST00000592972 256 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 AP001282.2-201ENST00000616149 309 ntBASIC1.6□□□□□ -2.15
COL28A1Q2UY09 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.59□□□□□ -2.15
COL28A1Q2UY09 Y_RNA.16-201ENST00000362421 102 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 SNORD33-201ENST00000362761 85 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 RNU4-41P-201ENST00000364426 143 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 U8.7-201ENST00000364940 136 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 SNORA26.5-201ENST00000391215 123 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC1.59□□□□□ -2.15
COL28A1Q2UY09 AC092991.1-201ENST00000477176 376 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.59□□□□□ -2.15
COL28A1Q2UY09 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.59□□□□□ -2.15
COL28A1Q2UY09 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 ICE2P2-201ENST00000483823 2787 ntBASIC1.59□□□□□ -2.15
COL28A1Q2UY09 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC1.59□□□□□ -2.15
COL28A1Q2UY09 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.59□□□□□ -2.16
COL28A1Q2UY09 MIRLET7C-201ENST00000362160 84 ntBASIC1.58□□□□□ -2.16
COL28A1Q2UY09 Y_RNA.47-201ENST00000362697 108 ntBASIC1.58□□□□□ -2.16
Retrieved 100 of 98,524 protein–RNA pairs in 105.6 ms