Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 MIR3145-201ENST00000580727 82 ntBASIC1.69□□□□□ -2.14
CTCFP49711 Y_RNA.210-201ENST00000364161 110 ntBASIC1.68□□□□□ -2.14
CTCFP49711 Y_RNA.383-201ENST00000383855 97 ntBASIC1.68□□□□□ -2.14
CTCFP49711 MIR193B-201ENST00000384907 83 ntBASIC1.68□□□□□ -2.14
CTCFP49711 AL034345.1-201ENST00000407768 123 ntBASIC1.68□□□□□ -2.14
CTCFP49711 RNU6-710P-201ENST00000410424 105 ntBASIC1.68□□□□□ -2.14
CTCFP49711 AL135790.2-201ENST00000437701 267 ntBASIC1.68□□□□□ -2.14
CTCFP49711 STAG3L5P-204ENST00000443759 179 ntBASIC1.68□□□□□ -2.14
CTCFP49711 HSPE1P25-201ENST00000455484 251 ntBASIC1.68□□□□□ -2.14
CTCFP49711 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.68□□□□□ -2.14
CTCFP49711 AL358944.1-201ENST00000528537 144 ntBASIC1.68□□□□□ -2.14
CTCFP49711 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.67□□□□□ -2.14
CTCFP49711 RNU6-1123P-201ENST00000362347 106 ntBASIC1.67□□□□□ -2.14
CTCFP49711 RNU6-770P-201ENST00000363929 105 ntBASIC1.67□□□□□ -2.14
CTCFP49711 Y_RNA.310-201ENST00000365063 113 ntBASIC1.67□□□□□ -2.14
CTCFP49711 RNU6-1080P-201ENST00000383982 107 ntBASIC1.67□□□□□ -2.14
CTCFP49711 MIR222-201ENST00000384992 110 ntBASIC1.67□□□□□ -2.14
CTCFP49711 Y_RNA.581-201ENST00000391017 97 ntBASIC1.67□□□□□ -2.14
CTCFP49711 AL590004.1-201ENST00000405321 300 ntBASIC1.67□□□□□ -2.14
CTCFP49711 RNU6-855P-201ENST00000410395 104 ntBASIC1.67□□□□□ -2.14
CTCFP49711 Y_RNA.602-201ENST00000410535 92 ntBASIC1.67□□□□□ -2.14
CTCFP49711 LINC01399-202ENST00000458450 244 ntBASIC1.67□□□□□ -2.14
CTCFP49711 HMGN1P10-201ENST00000474557 553 ntBASIC1.67□□□□□ -2.14
CTCFP49711 OR9P1P-201ENST00000496431 281 ntBASIC1.67□□□□□ -2.14
CTCFP49711 RNU2-56P-201ENST00000516826 190 ntBASIC1.67□□□□□ -2.14
CTCFP49711 SNORA40.15-201ENST00000516884 107 ntBASIC1.67□□□□□ -2.14
CTCFP49711 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.67□□□□□ -2.14
CTCFP49711 AC019176.1-201ENST00000518519 225 ntBASIC1.67□□□□□ -2.14
CTCFP49711 MIR1273G-201ENST00000577677 100 ntBASIC1.67□□□□□ -2.14
CTCFP49711 AL162424.1-201ENST00000602325 221 ntBASIC1.67□□□□□ -2.14
CTCFP49711 MIR6767-201ENST00000637302 66 ntBASIC1.67□□□□□ -2.14
CTCFP49711 Y_RNA.26-201ENST00000362539 101 ntBASIC1.66□□□□□ -2.14
CTCFP49711 RNU6-806P-201ENST00000365147 105 ntBASIC1.66□□□□□ -2.14
CTCFP49711 Y_RNA.368-201ENST00000365547 113 ntBASIC1.66□□□□□ -2.14
CTCFP49711 Y_RNA.418-201ENST00000384029 102 ntBASIC1.66□□□□□ -2.14
CTCFP49711 AC113618.1-201ENST00000416747 285 ntBASIC1.66□□□□□ -2.14
CTCFP49711 POLR2KP2-201ENST00000438155 177 ntBASIC1.66□□□□□ -2.14
CTCFP49711 SNORA28-201ENST00000606769 126 ntBASIC1.66□□□□□ -2.14
CTCFP49711 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.66□□□□□ -2.14
CTCFP49711 AL161722.3-201ENST00000605789 2983 ntBASIC1.66□□□□□ -2.14
CTCFP49711 Y_RNA.115-201ENST00000363272 98 ntBASIC1.65□□□□□ -2.15
CTCFP49711 Y_RNA.265-201ENST00000364677 108 ntBASIC1.65□□□□□ -2.15
CTCFP49711 PGBD4P5-201ENST00000445958 426 ntBASIC1.65□□□□□ -2.15
CTCFP49711 HSPE1P24-201ENST00000450782 238 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AC233266.1-201ENST00000454518 96 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AC098869.1-201ENST00000481627 292 ntBASIC1.65□□□□□ -2.15
CTCFP49711 MRPS35P2-201ENST00000508242 191 ntBASIC1.65□□□□□ -2.15
CTCFP49711 RNU7-28P-201ENST00000516759 62 ntBASIC1.65□□□□□ -2.15
CTCFP49711 RNU6-902P-201ENST00000517212 91 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.65□□□□□ -2.15
CTCFP49711 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.65□□□□□ -2.15
CTCFP49711 MIR5000-201ENST00000577717 103 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.65□□□□□ -2.15
CTCFP49711 AC005972.2-201ENST00000604690 348 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AC242852.1-201ENST00000612151 96 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AC073349.3-201ENST00000617616 186 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AL513423.1-201ENST00000621695 132 ntBASIC1.65□□□□□ -2.15
CTCFP49711 AC244015.1-201ENST00000622301 99 ntBASIC1.65□□□□□ -2.15
CTCFP49711 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.65□□□□□ -2.15
CTCFP49711 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.65□□□□□ -2.15
CTCFP49711 Y_RNA.19-201ENST00000362462 99 ntBASIC1.64□□□□□ -2.15
CTCFP49711 snoU2_19.2-201ENST00000363024 80 ntBASIC1.64□□□□□ -2.15
CTCFP49711 RNU4-80P-201ENST00000363200 141 ntBASIC1.64□□□□□ -2.15
CTCFP49711 Y_RNA.341-201ENST00000365341 102 ntBASIC1.64□□□□□ -2.15
CTCFP49711 Y_RNA.422-201ENST00000384054 114 ntBASIC1.64□□□□□ -2.15
CTCFP49711 Y_RNA.456-201ENST00000384232 111 ntBASIC1.64□□□□□ -2.15
CTCFP49711 RNU6-1011P-201ENST00000384668 107 ntBASIC1.64□□□□□ -2.15
CTCFP49711 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.64□□□□□ -2.15
CTCFP49711 RPL21P38-201ENST00000418090 167 ntBASIC1.64□□□□□ -2.15
CTCFP49711 RNY3P15-201ENST00000516297 97 ntBASIC1.64□□□□□ -2.15
CTCFP49711 MIR8063-201ENST00000621930 81 ntBASIC1.64□□□□□ -2.15
CTCFP49711 RNU4-90P-201ENST00000362773 141 ntBASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.136-201ENST00000363444 102 ntBASIC1.63□□□□□ -2.15
CTCFP49711 SNORA63-201ENST00000363450 132 ntBASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.152-201ENST00000363578 100 ntBASIC1.63□□□□□ -2.15
CTCFP49711 SNORD1A-201ENST00000364968 72 ntBASIC1.63□□□□□ -2.15
CTCFP49711 RNU6-424P-201ENST00000384367 105 ntBASIC1.63□□□□□ -2.15
CTCFP49711 MIR215-201ENST00000384858 110 ntBASIC1.63□□□□□ -2.15
CTCFP49711 MIR513A1-201ENST00000385138 129 ntBASIC1.63□□□□□ -2.15
CTCFP49711 RNA5SP482-201ENST00000391269 118 ntBASIC1.63□□□□□ -2.15
CTCFP49711 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.63□□□□□ -2.15
CTCFP49711 AC024067.1-201ENST00000426199 223 ntBASIC1.63□□□□□ -2.15
CTCFP49711 CALM2P4-201ENST00000430810 426 ntBASIC1.63□□□□□ -2.15
CTCFP49711 AL049830.1-201ENST00000468034 425 ntBASIC1.63□□□□□ -2.15
CTCFP49711 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.812-201ENST00000610788 101 ntBASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.784-201ENST00000613803 101 ntBASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.787-201ENST00000616522 101 ntBASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.780-201ENST00000617336 101 ntBASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.801-201ENST00000619005 101 ntBASIC1.63□□□□□ -2.15
CTCFP49711 Y_RNA.64-201ENST00000362845 102 ntBASIC1.62□□□□□ -2.15
CTCFP49711 RNU6-1323P-201ENST00000384025 107 ntBASIC1.62□□□□□ -2.15
CTCFP49711 MIR660-201ENST00000385235 97 ntBASIC1.62□□□□□ -2.15
CTCFP49711 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.62□□□□□ -2.15
CTCFP49711 U8.16-201ENST00000391279 133 ntBASIC1.62□□□□□ -2.15
CTCFP49711 RN7SKP51-201ENST00000410781 304 ntBASIC1.62□□□□□ -2.15
CTCFP49711 Z98949.2-201ENST00000440996 144 ntBASIC1.62□□□□□ -2.15
CTCFP49711 RNA5SP168-201ENST00000516642 112 ntBASIC1.62□□□□□ -2.15
CTCFP49711 AL442663.2-201ENST00000554385 511 ntBASIC1.62□□□□□ -2.15
CTCFP49711 AC068647.2-201ENST00000637380 353 ntBASIC1.62□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 112.9 ms