Protein–RNA interactions for Protein: P48436

SOX9, Transcription factor SOX-9, humanhuman

Predictions only

Length 509 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX9P48436 RPS29P6-201ENST00000438196 145 ntBASIC2.67□□□□□ -1.98
SOX9P48436 SNORD116-25-201ENST00000516517 92 ntBASIC2.67□□□□□ -1.98
SOX9P48436 RNU6-365P-201ENST00000517113 106 ntBASIC2.67□□□□□ -1.98
SOX9P48436 MIR5194-201ENST00000582634 120 ntBASIC2.67□□□□□ -1.98
SOX9P48436 MIR6844-201ENST00000637122 62 ntBASIC2.67□□□□□ -1.98
SOX9P48436 Z82195.2-201ENST00000612348 18351 ntBASIC2.66□□□□□ -1.98
SOX9P48436 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
SOX9P48436 Y_RNA.215-201ENST00000364204 112 ntBASIC2.66□□□□□ -1.98
SOX9P48436 Y_RNA.393-201ENST00000383936 102 ntBASIC2.66□□□□□ -1.98
SOX9P48436 MIR522-201ENST00000385071 87 ntBASIC2.66□□□□□ -1.98
SOX9P48436 NDUFA4P2-201ENST00000489989 244 ntBASIC2.66□□□□□ -1.98
SOX9P48436 SNORA31.25-201ENST00000517242 134 ntBASIC2.66□□□□□ -1.98
SOX9P48436 RNU1-104P-201ENST00000517280 175 ntBASIC2.66□□□□□ -1.98
SOX9P48436 AP001485.1-201ENST00000604799 199 ntBASIC2.66□□□□□ -1.98
SOX9P48436 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.66□□□□□ -1.98
SOX9P48436 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.66□□□□□ -1.98
SOX9P48436 ZNF658B-202ENST00000615961 3375 ntBASIC2.65□□□□□ -1.98
SOX9P48436 SNORD14E-201ENST00000364009 85 ntBASIC2.65□□□□□ -1.99
SOX9P48436 snoU2-30.1-201ENST00000365012 70 ntBASIC2.65□□□□□ -1.99
SOX9P48436 AL034345.1-201ENST00000407768 123 ntBASIC2.65□□□□□ -1.99
SOX9P48436 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC2.65□□□□□ -1.99
SOX9P48436 TMSB4XP3-201ENST00000445144 114 ntBASIC2.65□□□□□ -1.99
SOX9P48436 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.65□□□□□ -1.99
SOX9P48436 MRPS17P9-201ENST00000511924 393 ntBASIC2.65□□□□□ -1.99
SOX9P48436 RNA5SP282-201ENST00000516355 108 ntBASIC2.65□□□□□ -1.99
SOX9P48436 RNU6-826P-201ENST00000516827 104 ntBASIC2.65□□□□□ -1.99
SOX9P48436 MIR3646-201ENST00000578301 84 ntBASIC2.65□□□□□ -1.99
SOX9P48436 AC008507.4-201ENST00000585464 127 ntBASIC2.65□□□□□ -1.99
SOX9P48436 MIR7843-201ENST00000622274 79 ntBASIC2.65□□□□□ -1.99
SOX9P48436 SNORA63D-201ENST00000364359 132 ntBASIC2.64□□□□□ -1.99
SOX9P48436 SNORA25.7-201ENST00000364375 127 ntBASIC2.64□□□□□ -1.99
SOX9P48436 Y_RNA.634-201ENST00000364811 113 ntBASIC2.64□□□□□ -1.99
SOX9P48436 Z98742.3-201ENST00000418637 326 ntBASIC2.64□□□□□ -1.99
SOX9P48436 MIR548X2-201ENST00000579776 100 ntBASIC2.64□□□□□ -1.99
SOX9P48436 MIR3605-201ENST00000583214 100 ntBASIC2.64□□□□□ -1.99
SOX9P48436 MIR3658-201ENST00000636291 56 ntBASIC2.64□□□□□ -1.99
SOX9P48436 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.63□□□□□ -1.99
SOX9P48436 U8.5-201ENST00000364528 136 ntBASIC2.63□□□□□ -1.99
SOX9P48436 Y_RNA.486-201ENST00000384398 107 ntBASIC2.63□□□□□ -1.99
SOX9P48436 RNU6-768P-201ENST00000384683 107 ntBASIC2.63□□□□□ -1.99
SOX9P48436 RNA5SP450-201ENST00000411206 102 ntBASIC2.63□□□□□ -1.99
SOX9P48436 RPL30P13-201ENST00000418873 348 ntBASIC2.63□□□□□ -1.99
SOX9P48436 snoU13.26-201ENST00000459452 105 ntBASIC2.63□□□□□ -1.99
SOX9P48436 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC2.63□□□□□ -1.99
SOX9P48436 RNU6-504P-201ENST00000516568 104 ntBASIC2.63□□□□□ -1.99
SOX9P48436 RNA5SP481-201ENST00000516814 122 ntBASIC2.63□□□□□ -1.99
SOX9P48436 SUB1P4-201ENST00000566062 339 ntBASIC2.63□□□□□ -1.99
SOX9P48436 MIR4762-201ENST00000585261 75 ntBASIC2.63□□□□□ -1.99
SOX9P48436 AC245884.12-201ENST00000615364 59 ntBASIC2.63□□□□□ -1.99
SOX9P48436 ZNF451-208ENST00000491832 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC2.62□□□□□ -1.99
SOX9P48436 Y_RNA.91-201ENST00000363042 107 ntBASIC2.62□□□□□ -1.99
SOX9P48436 RNU6-442P-201ENST00000383968 104 ntBASIC2.62□□□□□ -1.99
SOX9P48436 MIR27B-201ENST00000385129 97 ntBASIC2.62□□□□□ -1.99
SOX9P48436 TRAJ2-201ENST00000390535 66 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SOX9P48436 SNORA75.5-201ENST00000391291 81 ntBASIC2.62□□□□□ -1.99
SOX9P48436 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC2.62□□□□□ -1.99
SOX9P48436 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SOX9P48436 RNU7-34P-201ENST00000459394 64 ntBASIC2.62□□□□□ -1.99
SOX9P48436 AC090142.3-201ENST00000519012 385 ntBASIC2.62□□□□□ -1.99
SOX9P48436 AC004486.1-201ENST00000546846 233 ntBASIC2.62□□□□□ -1.99
SOX9P48436 AC112693.2-201ENST00000556538 232 ntBASIC2.62□□□□□ -1.99
SOX9P48436 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.62□□□□□ -1.99
SOX9P48436 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.62□□□□□ -1.99
SOX9P48436 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.62□□□□□ -1.99
SOX9P48436 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC2.62□□□□□ -1.99
SOX9P48436 ZNF702P-202ENST00000434269 1966 ntBASIC2.61□□□□□ -1.99
SOX9P48436 SNORA25.6-201ENST00000364121 118 ntBASIC2.61□□□□□ -1.99
SOX9P48436 SNORD50.2-201ENST00000365465 70 ntBASIC2.61□□□□□ -1.99
SOX9P48436 MIR504-201ENST00000385065 83 ntBASIC2.61□□□□□ -1.99
SOX9P48436 SNORD72-201ENST00000390994 80 ntBASIC2.61□□□□□ -1.99
SOX9P48436 RNU4-53P-201ENST00000410828 140 ntBASIC2.61□□□□□ -1.99
SOX9P48436 RNA5SP57-201ENST00000459463 123 ntBASIC2.61□□□□□ -1.99
SOX9P48436 RPL23AP63-201ENST00000498752 471 ntBASIC2.61□□□□□ -1.99
SOX9P48436 MIR4524B-201ENST00000581569 115 ntBASIC2.61□□□□□ -1.99
SOX9P48436 AC097639.2-201ENST00000603159 172 ntBASIC2.61□□□□□ -1.99
SOX9P48436 U4.3-201ENST00000621047 82 ntBASIC2.61□□□□□ -1.99
SOX9P48436 AC091895.1-201ENST00000624494 256 ntBASIC2.61□□□□□ -1.99
SOX9P48436 AGL-204ENST00000370161 6923 ntTSL 5 BASIC2.6□□□□□ -1.99
SOX9P48436 RNU6-112P-201ENST00000363599 104 ntBASIC2.6□□□□□ -1.99
SOX9P48436 RNU6-704P-201ENST00000364162 103 ntBASIC2.6□□□□□ -1.99
SOX9P48436 SNORA67.1-201ENST00000364749 141 ntBASIC2.6□□□□□ -1.99
SOX9P48436 RNU6-597P-201ENST00000365620 102 ntBASIC2.6□□□□□ -1.99
SOX9P48436 RNU6-163P-201ENST00000384396 106 ntBASIC2.6□□□□□ -1.99
SOX9P48436 Y_RNA.497-201ENST00000384447 98 ntBASIC2.6□□□□□ -1.99
SOX9P48436 AL158823.1-201ENST00000418441 478 ntBASIC2.6□□□□□ -1.99
SOX9P48436 HSPE1P9-201ENST00000440046 311 ntBASIC2.6□□□□□ -1.99
SOX9P48436 HMGN2P32-201ENST00000444648 269 ntBASIC2.6□□□□□ -1.99
SOX9P48436 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.6□□□□□ -1.99
SOX9P48436 SNORA25.12-201ENST00000516202 82 ntBASIC2.6□□□□□ -1.99
SOX9P48436 SNORA31.10-201ENST00000516482 106 ntBASIC2.6□□□□□ -1.99
SOX9P48436 SNORD45.4-201ENST00000516629 73 ntBASIC2.6□□□□□ -1.99
SOX9P48436 RNU2-19P-201ENST00000517288 84 ntBASIC2.6□□□□□ -1.99
SOX9P48436 MIR4709-201ENST00000577272 72 ntBASIC2.6□□□□□ -1.99
SOX9P48436 MIR4769-201ENST00000584126 77 ntBASIC2.6□□□□□ -1.99
SOX9P48436 AC120024.3-201ENST00000603167 156 ntBASIC2.6□□□□□ -1.99
SOX9P48436 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SOX9P48436 SNORD50B-201ENST00000364995 70 ntBASIC2.59□□□□□ -1.99
SOX9P48436 SNORD23.1-201ENST00000408212 104 ntBASIC2.59□□□□□ -1.99
SOX9P48436 SNORA9.3-201ENST00000516383 129 ntBASIC2.59□□□□□ -1.99
SOX9P48436 MIR3910-1-201ENST00000580936 111 ntBASIC2.59□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 174.4 ms