Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 Y_RNA.422-201ENST00000384054 114 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 RNU6-102P-201ENST00000384485 104 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 AL590004.1-201ENST00000405321 300 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.22□□□□□ -2.21
TNFRSF4P43489 ELOCP20-201ENST00000422460 345 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 AL162725.1-201ENST00000435405 301 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 COX6CP14-201ENST00000469580 174 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.22□□□□□ -2.21
TNFRSF4P43489 RN7SKP88-201ENST00000516847 250 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.22□□□□□ -2.21
TNFRSF4P43489 AP002004.2-201ENST00000531656 154 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 AL442663.2-201ENST00000554385 511 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 AC004832.4-201ENST00000608952 331 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 7SK.8-201ENST00000612110 250 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 7SK.11-201ENST00000615477 250 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 7SK.13-201ENST00000622040 250 ntBASIC1.22□□□□□ -2.21
TNFRSF4P43489 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
TNFRSF4P43489 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
TNFRSF4P43489 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.21□□□□□ -2.22
TNFRSF4P43489 MIR96-201ENST00000362288 78 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 Y_RNA.19-201ENST00000362462 99 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 RNU4-90P-201ENST00000362773 141 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 RNU4-80P-201ENST00000363200 141 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 RNU6-806P-201ENST00000365147 105 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 MIR489-201ENST00000384923 84 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 MIR660-201ENST00000385235 97 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
TNFRSF4P43489 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
TNFRSF4P43489 SNORD115-46-201ENST00000390982 71 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 RPS4XP11-201ENST00000446897 772 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 RPS20P10-201ENST00000451209 253 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 HSPE1P25-201ENST00000455484 251 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 RPL39P38-201ENST00000467018 153 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 Y_RNA.812-201ENST00000610788 101 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 Y_RNA.784-201ENST00000613803 101 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 Y_RNA.787-201ENST00000616522 101 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 Y_RNA.780-201ENST00000617336 101 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 Y_RNA.801-201ENST00000619005 101 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 AC068647.2-201ENST00000637380 353 ntBASIC1.21□□□□□ -2.22
TNFRSF4P43489 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
TNFRSF4P43489 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.21□□□□□ -2.22
TNFRSF4P43489 Y_RNA.214-201ENST00000364201 112 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 RNU6-1080P-201ENST00000383982 107 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 SNORA12.1-201ENST00000390873 148 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 AL078595.1-201ENST00000404458 226 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 RNU6-121P-201ENST00000410525 99 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 RPL21P38-201ENST00000418090 167 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.2□□□□□ -2.22
TNFRSF4P43489 LINC01399-202ENST00000458450 244 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 AC098869.1-201ENST00000481627 292 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 RNU6-496P-201ENST00000516145 99 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.2□□□□□ -2.22
TNFRSF4P43489 AC019288.1-201ENST00000557918 224 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 AC068338.1-201ENST00000565567 176 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 MIR3664-201ENST00000579074 99 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 MIR4295-201ENST00000585286 85 ntBASIC1.2□□□□□ -2.22
TNFRSF4P43489 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.2□□□□□ -2.22
TNFRSF4P43489 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
TNFRSF4P43489 Y_RNA.26-201ENST00000362539 101 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 Y_RNA.64-201ENST00000362845 102 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 RNU1-93P-201ENST00000364704 169 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 Y_RNA.276-201ENST00000364732 109 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 Y_RNA.569-201ENST00000384749 103 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 MIR606-201ENST00000384851 96 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 Y_RNA.581-201ENST00000391017 97 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 RPS29P29-201ENST00000456396 171 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 AL049830.1-201ENST00000468034 425 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 AC111194.2-201ENST00000511222 455 ntTSL 5 BASIC1.19□□□□□ -2.22
TNFRSF4P43489 RNU7-28P-201ENST00000516759 62 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 AP003733.2-201ENST00000529409 171 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 AC011604.1-201ENST00000545978 196 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 AC005972.2-201ENST00000604690 348 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 AC037487.3-201ENST00000606668 112 ntBASIC1.19□□□□□ -2.22
TNFRSF4P43489 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.19□□□□□ -2.22
TNFRSF4P43489 SNORA25.8-201ENST00000364831 128 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 Y_RNA.310-201ENST00000365063 113 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 RNU6-290P-201ENST00000365212 101 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 Y_RNA.368-201ENST00000365547 113 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 RNU6-514P-201ENST00000384208 107 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 RNU6-1160P-201ENST00000384546 104 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 MIR215-201ENST00000384858 110 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 RNU6-1248P-201ENST00000391096 64 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 MTATP8P1-201ENST00000467115 207 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 HMGN1P10-201ENST00000474557 553 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 AC092991.1-201ENST00000477176 376 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 AC087343.1-201ENST00000477341 475 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 RNU6-1143P-201ENST00000516125 104 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 Y_RNA.720-201ENST00000517166 92 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 AL160236.1-201ENST00000556317 195 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 AC106754.2-201ENST00000623006 233 ntBASIC1.18□□□□□ -2.22
TNFRSF4P43489 SNORD68-201ENST00000363214 84 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 Y_RNA.456-201ENST00000384232 111 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 RNU6-713P-201ENST00000384761 107 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 SNORA53-201ENST00000391141 249 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 RNA5SP482-201ENST00000391269 118 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 CALM2P4-201ENST00000430810 426 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 AL731563.1-201ENST00000442202 214 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 RNA5SP168-201ENST00000516642 112 ntBASIC1.17□□□□□ -2.22
TNFRSF4P43489 RNU6-635P-201ENST00000516651 102 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 173.8 ms