Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 MIR4272-201ENST00000635924 64 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNU1-36P-201ENST00000365130 165 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 RNU6-716P-201ENST00000365621 103 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 Y_RNA.383-201ENST00000383855 97 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 RNU6-20P-201ENST00000384106 107 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 SNORA72-201ENST00000384339 132 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 Y_RNA.498-201ENST00000384460 102 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 MIR200A-201ENST00000384875 90 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 MIR452-201ENST00000385020 85 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 RNU4-30P-201ENST00000410245 143 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 MLLT10P1-201ENST00000418346 262 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.66□□□□□ -2.3
SCN1AP35498 RPS20P10-201ENST00000451209 253 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 AC233266.1-201ENST00000454518 96 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 RNU6-322P-201ENST00000516010 103 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 RNA5SP436-201ENST00000516020 115 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 AC104695.3-201ENST00000604052 296 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 AC242852.1-201ENST00000612151 96 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 AC104985.2-201ENST00000620598 500 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 AC244015.1-201ENST00000622301 99 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 AL391516.1-201ENST00000554380 2449 ntBASIC0.66□□□□□ -2.3
SCN1AP35498 MT-CO2-201ENST00000361739 684 ntAPPRIS P1 BASIC0.65□□□□□ -2.3
SCN1AP35498 Y_RNA.172-201ENST00000363765 102 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 RNU6-125P-201ENST00000384505 107 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 RNU6-159P-201ENST00000391080 106 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 RNA5SP255-201ENST00000516370 107 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 SNORA20.3-201ENST00000516880 132 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 SNORA18.7-201ENST00000516910 131 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 AC023442.1-201ENST00000531247 422 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 LARP7P1-201ENST00000605576 316 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 AC011476.5-201ENST00000615594 130 ntBASIC0.65□□□□□ -2.3
SCN1AP35498 AC008163.1-202ENST00000636004 2889 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 RNU6-136P-201ENST00000384663 107 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 MIR516B2-201ENST00000385190 85 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 MIR136-201ENST00000385207 82 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 SNORD89-201ENST00000390981 114 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 MIR873-201ENST00000401120 77 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 RNU2-61P-201ENST00000411069 191 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 AC063976.4-201ENST00000421971 163 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 AC096644.2-201ENST00000429278 159 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 RNU7-90P-201ENST00000459216 62 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.65□□□□□ -2.31
SCN1AP35498 RNU6-408P-201ENST00000515910 100 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 RNU7-4P-201ENST00000516961 62 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 AC090155.2-201ENST00000518854 267 ntTSL 3 BASIC0.65□□□□□ -2.31
SCN1AP35498 AC019288.1-201ENST00000557918 224 ntBASIC0.65□□□□□ -2.31
SCN1AP35498 Y_RNA.148-201ENST00000363557 117 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 Y_RNA.310-201ENST00000365063 113 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 MIR508-201ENST00000384857 115 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN1AP35498 RPEP5-201ENST00000441137 268 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.64□□□□□ -2.31
SCN1AP35498 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.64□□□□□ -2.31
SCN1AP35498 Y_RNA.632-201ENST00000459189 102 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 RNU6-507P-201ENST00000516045 100 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 SNORD79.1-201ENST00000516069 84 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 RNU6-229P-201ENST00000516614 102 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC040926.1-201ENST00000530195 238 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC138305.3-201ENST00000624988 240 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
SCN1AP35498 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
SCN1AP35498 RNU6-801P-201ENST00000364087 105 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC117470.1-201ENST00000381974 330 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 RNU6-1264P-201ENST00000383891 107 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 MIR1298-201ENST00000408783 112 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 CHEK2P4-201ENST00000450340 246 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 RNU6-1170P-201ENST00000515974 106 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC133485.1-201ENST00000567176 124 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC138907.6-201ENST00000568401 126 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 MIR4659A-201ENST00000580269 81 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AP003357.1-201ENST00000604497 148 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC084781.2-201ENST00000615568 161 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 AC012676.2-201ENST00000619258 186 ntBASIC0.64□□□□□ -2.31
SCN1AP35498 Y_RNA.143-201ENST00000363520 106 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 SNORA75.2-201ENST00000391138 150 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 SNORA75.3-201ENST00000391231 150 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 AC104332.1-201ENST00000440471 797 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.63□□□□□ -2.31
SCN1AP35498 FGF7P4-201ENST00000509595 295 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 Y_RNA.661-201ENST00000516003 99 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 RNU6-155P-201ENST00000516347 100 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 RNU6-1096P-201ENST00000517089 102 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 MIR4801-201ENST00000582704 82 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 AL391903.3-201ENST00000612158 163 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC0.63□□□□□ -2.31
SCN1AP35498 AC091925.1-201ENST00000623204 462 ntBASIC0.63□□□□□ -2.31
SCN1AP35498 RNA5SP327-201ENST00000362494 101 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 Y_RNA.58-201ENST00000362807 102 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 Y_RNA.154-201ENST00000363624 102 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 Y_RNA.252-201ENST00000364556 101 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNY3P1-201ENST00000365085 102 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 Y_RNA.341-201ENST00000365341 102 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNY3-201ENST00000365484 102 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 SNORA2B-201ENST00000384583 137 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 MIR942-201ENST00000401111 86 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 AC092628.1-201ENST00000436250 252 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 AL392103.1-201ENST00000447000 198 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNU6-437P-201ENST00000459408 95 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 SNORA70.22-201ENST00000517160 124 ntBASIC0.62□□□□□ -2.31
SCN1AP35498 RNU6-1116P-201ENST00000517269 99 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 134.3 ms