Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 RNU6-472P-201ENST00000384299 107 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 Y_RNA.518-201ENST00000384552 113 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 MIR568-201ENST00000385036 95 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
SHMT1P34896 RNA5SP482-201ENST00000391269 118 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 Y_RNA.621-201ENST00000411065 96 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.68□□□□□ -2.14
SHMT1P34896 JTBP1-201ENST00000441314 247 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 RNU7-115P-201ENST00000516433 55 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 AP003357.1-201ENST00000604497 148 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
SHMT1P34896 Y_RNA.288-201ENST00000364854 92 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 U8.7-201ENST00000364940 136 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 Y_RNA.396-201ENST00000383949 103 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 RNU6-439P-201ENST00000384188 106 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 MIR30A-201ENST00000385092 71 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 MIR1267-201ENST00000408723 78 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 AC104332.1-201ENST00000440471 797 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 AC117454.1-201ENST00000491120 168 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 AC008834.1-201ENST00000511612 175 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 RNU1-92P-201ENST00000517017 135 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC1.67□□□□□ -2.14
SHMT1P34896 MIR548AY-201ENST00000617669 107 ntBASIC1.67□□□□□ -2.14
SHMT1P34896 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.67□□□□□ -2.14
SHMT1P34896 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
SHMT1P34896 WWP1P1-201ENST00000466609 2769 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
SHMT1P34896 UBE2WP1-201ENST00000362030 340 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 U8.1-201ENST00000362843 134 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 RNU6-899P-201ENST00000363947 107 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 Y_RNA.327-201ENST00000365201 102 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 RNU6-196P-201ENST00000384315 107 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.66□□□□□ -2.14
SHMT1P34896 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.66□□□□□ -2.14
SHMT1P34896 STAG3L5P-204ENST00000443759 179 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 AC024405.2-202ENST00000532731 184 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 MIR3198-2-201ENST00000577868 80 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 U4.1-201ENST00000620349 87 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.66□□□□□ -2.14
SHMT1P34896 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.66□□□□□ -2.14
SHMT1P34896 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.66□□□□□ -2.14
SHMT1P34896 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.65□□□□□ -2.14
SHMT1P34896 Y_RNA.44-201ENST00000362676 108 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 RNY1P10-201ENST00000363268 113 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 RNU6-392P-201ENST00000364926 101 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 RNU6-1080P-201ENST00000383982 107 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 snosnR66.1-201ENST00000391095 99 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 SNORA26.5-201ENST00000391215 123 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 MIR934-201ENST00000401241 83 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 RNA5SP247-201ENST00000411181 105 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 RNU7-141P-201ENST00000459304 62 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 RPL23AP54-201ENST00000495129 419 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 AC127455.1-201ENST00000565496 145 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 AC021506.2-201ENST00000612354 169 ntBASIC1.65□□□□□ -2.15
SHMT1P34896 RNU6-1272P-201ENST00000362776 107 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 Y_RNA.217-201ENST00000364214 105 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 Y_RNA.275-201ENST00000364726 110 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 RNU6-662P-201ENST00000384253 104 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 RNU6-763P-201ENST00000390865 106 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 MTCO2P33-201ENST00000402100 465 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 RNU2-14P-201ENST00000411053 191 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.64□□□□□ -2.15
SHMT1P34896 RPL30P13-201ENST00000418873 348 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 PGBD4P5-201ENST00000445958 426 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 SNORD127-201ENST00000458892 86 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 Y_RNA.641-201ENST00000459414 105 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 MIR8070-201ENST00000616510 88 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 AC073349.3-201ENST00000617616 186 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 7SK.10-201ENST00000621414 298 ntBASIC1.64□□□□□ -2.15
SHMT1P34896 AC134026.1-201ENST00000623249 2239 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 RNU6-1123P-201ENST00000362347 106 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 RNU6-1048P-201ENST00000364054 107 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 RNU6-144P-201ENST00000383951 107 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 RNU6-203P-201ENST00000384038 104 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 RNU6-463P-201ENST00000384340 107 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 SNORA36B-201ENST00000410438 131 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC1.63□□□□□ -2.15
SHMT1P34896 SNRPGP13-201ENST00000442212 177 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC1.63□□□□□ -2.15
SHMT1P34896 Y_RNA.637-201ENST00000459424 114 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 AC099513.1-201ENST00000490423 301 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 OR9P1P-201ENST00000496431 281 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.63□□□□□ -2.15
SHMT1P34896 SNORA77B-201ENST00000578179 125 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 U2.14-201ENST00000615943 113 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 AL513423.1-201ENST00000621695 132 ntBASIC1.63□□□□□ -2.15
SHMT1P34896 Y_RNA.144-201ENST00000363521 113 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 RNU4-41P-201ENST00000364426 143 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 Y_RNA.352-201ENST00000365439 102 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 RNU6-997P-201ENST00000384725 107 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 MIR194-1-201ENST00000384892 85 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 AL161935.2-201ENST00000414627 60 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 snoU13.9-201ENST00000458927 103 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 AC023790.1-201ENST00000482174 347 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 RNU6-970P-201ENST00000516312 107 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 MIR4503-201ENST00000582187 83 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 AC013791.1-201ENST00000616619 62 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 AL353770.2-201ENST00000620024 78 ntBASIC1.62□□□□□ -2.15
SHMT1P34896 MIR424-201ENST00000362227 98 ntBASIC1.61□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 119.8 ms