Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 Y_RNA.674-201ENST00000516362 113 ntBASIC1.98□□□□□ -2.09
CIITAP33076 SNORA81.3-201ENST00000517283 198 ntBASIC1.98□□□□□ -2.09
CIITAP33076 AC127455.1-201ENST00000565496 145 ntBASIC1.98□□□□□ -2.09
CIITAP33076 MIR4713-201ENST00000582691 75 ntBASIC1.98□□□□□ -2.09
CIITAP33076 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.98□□□□□ -2.09
CIITAP33076 POLR3GP1-201ENST00000594073 261 ntBASIC1.98□□□□□ -2.09
CIITAP33076 AL359075.3-201ENST00000613288 217 ntBASIC1.98□□□□□ -2.09
CIITAP33076 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.97□□□□□ -2.09
CIITAP33076 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC1.97□□□□□ -2.09
CIITAP33076 snoU2_19.4-201ENST00000364329 80 ntBASIC1.97□□□□□ -2.09
CIITAP33076 Y_RNA.262-201ENST00000364641 102 ntBASIC1.97□□□□□ -2.09
CIITAP33076 RNU6-923P-201ENST00000364753 107 ntBASIC1.97□□□□□ -2.09
CIITAP33076 Y_RNA.308-201ENST00000365043 101 ntBASIC1.97□□□□□ -2.09
CIITAP33076 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC1.97□□□□□ -2.09
CIITAP33076 AC245047.4-201ENST00000433189 144 ntBASIC1.97□□□□□ -2.09
CIITAP33076 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC1.97□□□□□ -2.09
CIITAP33076 RPS27P1-201ENST00000450552 247 ntBASIC1.97□□□□□ -2.09
CIITAP33076 RNA5SP57-201ENST00000459463 123 ntBASIC1.97□□□□□ -2.09
CIITAP33076 AC091021.1-201ENST00000468051 388 ntBASIC1.97□□□□□ -2.09
CIITAP33076 AC022559.1-201ENST00000520905 205 ntBASIC1.97□□□□□ -2.09
CIITAP33076 AC004792.1-201ENST00000614523 137 ntBASIC1.97□□□□□ -2.09
CIITAP33076 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.96□□□□□ -2.1
CIITAP33076 Y_RNA.29-201ENST00000362570 113 ntBASIC1.96□□□□□ -2.1
CIITAP33076 SNORD48-201ENST00000364953 64 ntBASIC1.96□□□□□ -2.1
CIITAP33076 RNU6-376P-201ENST00000384731 106 ntBASIC1.96□□□□□ -2.1
CIITAP33076 MIR626-201ENST00000385032 94 ntBASIC1.96□□□□□ -2.1
CIITAP33076 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.96□□□□□ -2.1
CIITAP33076 MIR1278-201ENST00000408753 81 ntBASIC1.96□□□□□ -2.1
CIITAP33076 RNU6-383P-201ENST00000410864 94 ntBASIC1.96□□□□□ -2.1
CIITAP33076 RNA5SP501-201ENST00000410990 112 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AC009310.1-201ENST00000414414 451 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AC010154.1-201ENST00000425857 269 ntBASIC1.96□□□□□ -2.1
CIITAP33076 Z98949.2-201ENST00000440996 144 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AC055733.2-201ENST00000504737 340 ntTSL 2 BASIC1.96□□□□□ -2.1
CIITAP33076 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.96□□□□□ -2.1
CIITAP33076 RNU1-142P-201ENST00000516682 145 ntBASIC1.96□□□□□ -2.1
CIITAP33076 SNORA44.1-201ENST00000517031 108 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AC024995.1-201ENST00000523014 93 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AL929325.1-201ENST00000603096 117 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AC022217.4-201ENST00000604389 163 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.96□□□□□ -2.1
CIITAP33076 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.96□□□□□ -2.1
CIITAP33076 AC018630.2-201ENST00000534866 2403 ntBASIC1.95□□□□□ -2.1
CIITAP33076 AC245060.5-201ENST00000610778 3293 ntBASIC1.95□□□□□ -2.1
CIITAP33076 RNU6-1205P-201ENST00000363625 106 ntBASIC1.95□□□□□ -2.1
CIITAP33076 SNORA72-201ENST00000384339 132 ntBASIC1.95□□□□□ -2.1
CIITAP33076 RNU6-381P-201ENST00000391259 108 ntBASIC1.95□□□□□ -2.1
CIITAP33076 RNU6-493P-201ENST00000391321 108 ntBASIC1.95□□□□□ -2.1
CIITAP33076 AL627390.1-201ENST00000396055 340 ntBASIC1.95□□□□□ -2.1
CIITAP33076 MIR548I3-201ENST00000408378 149 ntBASIC1.95□□□□□ -2.1
CIITAP33076 MIR548I1-201ENST00000408810 149 ntBASIC1.95□□□□□ -2.1
CIITAP33076 AL138752.1-201ENST00000452964 351 ntBASIC1.95□□□□□ -2.1
CIITAP33076 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.95□□□□□ -2.1
CIITAP33076 AC108729.3-201ENST00000513484 108 ntBASIC1.95□□□□□ -2.1
CIITAP33076 SCARNA8-201ENST00000515924 131 ntBASIC1.95□□□□□ -2.1
CIITAP33076 RNU7-116P-201ENST00000516940 62 ntBASIC1.95□□□□□ -2.1
CIITAP33076 RNU6-1096P-201ENST00000517089 102 ntBASIC1.95□□□□□ -2.1
CIITAP33076 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.95□□□□□ -2.1
CIITAP33076 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.95□□□□□ -2.1
CIITAP33076 AC084364.2-201ENST00000546924 395 ntBASIC1.95□□□□□ -2.1
CIITAP33076 Z83818.1-201ENST00000603584 150 ntBASIC1.95□□□□□ -2.1
CIITAP33076 MIR6079-201ENST00000635807 62 ntBASIC1.95□□□□□ -2.1
CIITAP33076 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.95□□□□□ -2.1
CIITAP33076 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
CIITAP33076 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
CIITAP33076 RNU6-674P-201ENST00000363831 107 ntBASIC1.94□□□□□ -2.1
CIITAP33076 Y_RNA.293-201ENST00000364908 93 ntBASIC1.94□□□□□ -2.1
CIITAP33076 RNU6-144P-201ENST00000383951 107 ntBASIC1.94□□□□□ -2.1
CIITAP33076 MIR515-2-201ENST00000384883 83 ntBASIC1.94□□□□□ -2.1
CIITAP33076 MIR515-1-201ENST00000384884 83 ntBASIC1.94□□□□□ -2.1
CIITAP33076 MIR526A2-201ENST00000390198 65 ntBASIC1.94□□□□□ -2.1
CIITAP33076 COX6CP10-201ENST00000416832 224 ntBASIC1.94□□□□□ -2.1
CIITAP33076 AC011604.1-201ENST00000545978 196 ntBASIC1.94□□□□□ -2.1
CIITAP33076 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.94□□□□□ -2.1
CIITAP33076 SUB1P4-201ENST00000566062 339 ntBASIC1.94□□□□□ -2.1
CIITAP33076 MIR5094-201ENST00000578766 85 ntBASIC1.94□□□□□ -2.1
CIITAP33076 AC100821.1-201ENST00000523153 2479 ntBASIC1.94□□□□□ -2.1
CIITAP33076 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.93□□□□□ -2.1
CIITAP33076 Y_RNA.24-201ENST00000362508 103 ntBASIC1.93□□□□□ -2.1
CIITAP33076 RNU6-682P-201ENST00000363843 106 ntBASIC1.93□□□□□ -2.1
CIITAP33076 RNU4-13P-201ENST00000364019 141 ntBASIC1.93□□□□□ -2.1
CIITAP33076 Y_RNA.435-201ENST00000384095 112 ntBASIC1.93□□□□□ -2.1
CIITAP33076 SNORA8.3-201ENST00000384679 139 ntBASIC1.93□□□□□ -2.1
CIITAP33076 PCNPP3-201ENST00000393579 471 ntBASIC1.93□□□□□ -2.1
CIITAP33076 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.93□□□□□ -2.1
CIITAP33076 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.93□□□□□ -2.1
CIITAP33076 RNU7-120P-201ENST00000459334 63 ntBASIC1.93□□□□□ -2.1
CIITAP33076 RPL23AP54-201ENST00000495129 419 ntBASIC1.93□□□□□ -2.1
CIITAP33076 RNU6-453P-201ENST00000516819 85 ntBASIC1.93□□□□□ -2.1
CIITAP33076 RNU6-341P-201ENST00000516973 96 ntBASIC1.93□□□□□ -2.1
CIITAP33076 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC1.93□□□□□ -2.1
CIITAP33076 AC022254.1-201ENST00000567857 235 ntBASIC1.93□□□□□ -2.1
CIITAP33076 MIR3618-201ENST00000580330 88 ntBASIC1.93□□□□□ -2.1
CIITAP33076 MIR8081-201ENST00000611533 95 ntBASIC1.93□□□□□ -2.1
CIITAP33076 Y_RNA.802-201ENST00000614892 130 ntBASIC1.93□□□□□ -2.1
CIITAP33076 FTX_2.1-201ENST00000618816 94 ntBASIC1.93□□□□□ -2.1
CIITAP33076 SAGE1-202ENST00000370709 2879 ntAPPRIS P2 TSL 5 BASIC1.93□□□□□ -2.1
CIITAP33076 MGAT4C-207ENST00000552808 1937 ntAPPRIS P1 TSL 2 BASIC1.92□□□□□ -2.1
CIITAP33076 RNU6-969P-201ENST00000383900 105 ntBASIC1.92□□□□□ -2.1
CIITAP33076 RNU6-1080P-201ENST00000383982 107 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms