Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC134026.1-201ENST00000623249 2239 ntBASIC1.4□□□□□ -2.18
HOXD4P09016 AC018630.2-201ENST00000534866 2403 ntBASIC1.4□□□□□ -2.18
HOXD4P09016 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
HOXD4P09016 UBE2WP1-201ENST00000362030 340 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-1272P-201ENST00000362776 107 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.117-201ENST00000363294 101 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 SNORA63D-201ENST00000364359 132 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-740P-201ENST00000364734 105 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.350-201ENST00000365409 98 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.352-201ENST00000365439 102 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 SNORA72.4-201ENST00000384174 132 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 Y_RNA.477-201ENST00000384352 108 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-763P-201ENST00000390865 106 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.4□□□□□ -2.19
HOXD4P09016 AC104332.1-201ENST00000440471 797 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RPS4XP11-201ENST00000446897 772 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RPL39P38-201ENST00000467018 153 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RPL36AP21-201ENST00000490372 323 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 RNU6-1096P-201ENST00000517089 102 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 SNORA31.24-201ENST00000517232 57 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 AC068647.2-201ENST00000637380 353 ntBASIC1.4□□□□□ -2.19
HOXD4P09016 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.4□□□□□ -2.19
HOXD4P09016 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD4P09016 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.39□□□□□ -2.19
HOXD4P09016 Y_RNA.54-201ENST00000362766 105 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 SNORA7.1-201ENST00000363750 139 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU4-13P-201ENST00000364019 141 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 SNORA4.2-201ENST00000365313 147 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 Y_RNA.447-201ENST00000384184 113 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU6-1289P-201ENST00000384431 106 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR520A-201ENST00000384862 85 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR548H3-201ENST00000408771 118 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU6-651P-201ENST00000411040 105 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 U8.19-201ENST00000459095 133 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 Y_RNA.637-201ENST00000459424 114 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 NMTRQ-TTG12-1-201ENST00000467595 72 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 RNU6-1291P-201ENST00000516591 104 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 SNORA31.17-201ENST00000516953 127 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR4643-201ENST00000577473 78 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR3128-201ENST00000581957 66 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 AC005972.2-201ENST00000604690 348 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 AL008718.3-201ENST00000610217 321 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 MIR7974-201ENST00000615835 79 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 KCNQ1OT1_5.1-201ENST00000621902 226 ntBASIC1.39□□□□□ -2.19
HOXD4P09016 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.39□□□□□ -2.19
HOXD4P09016 ZNF209P-201ENST00000593450 2304 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC068700.1-201ENST00000565862 3754 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.60-201ENST00000362831 98 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.122-201ENST00000363331 96 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 SNORD27-201ENST00000363981 72 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.267-201ENST00000364679 109 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.277-201ENST00000364754 102 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 U8.7-201ENST00000364940 136 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 Y_RNA.416-201ENST00000384014 113 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MIR520G-201ENST00000385064 90 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MTCO2P33-201ENST00000402100 465 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 BTF3P11-201ENST00000426582 477 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC245047.3-201ENST00000429428 127 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 HSPE1P9-201ENST00000440046 311 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC069257.2-201ENST00000441819 155 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC245517.4-201ENST00000448601 281 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 RNU7-141P-201ENST00000459304 62 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 RNU7-94P-201ENST00000459576 63 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC117454.1-201ENST00000491120 168 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.38□□□□□ -2.19
HOXD4P09016 RNU7-115P-201ENST00000516433 55 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AC024405.2-202ENST00000532731 184 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AP000942.4-201ENST00000604811 241 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MIR8074-201ENST00000615081 81 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 AL078604.3-201ENST00000615580 211 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 MIR548AY-201ENST00000617669 107 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 snoU18.1-201ENST00000629629 71 ntBASIC1.38□□□□□ -2.19
HOXD4P09016 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXD4P09016 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
HOXD4P09016 Y_RNA.401-201ENST00000383965 117 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 RNU6-1323P-201ENST00000384025 107 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 Y_RNA.539-201ENST00000384635 107 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXD4P09016 MIR1276-201ENST00000408707 83 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 RNU2-7P-201ENST00000410794 178 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.37□□□□□ -2.19
HOXD4P09016 SNORA31.10-201ENST00000516482 106 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 RNU6-341P-201ENST00000516973 96 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 AL162424.1-201ENST00000602325 221 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 MIR6504-201ENST00000613520 61 ntBASIC1.37□□□□□ -2.19
HOXD4P09016 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.37□□□□□ -2.19
HOXD4P09016 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXD4P09016 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
HOXD4P09016 MIR424-201ENST00000362227 98 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 SNORA1B-201ENST00000362535 133 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNU6-338P-201ENST00000383888 105 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNU6-1080P-201ENST00000383982 107 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNU6-211P-201ENST00000384047 107 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
HOXD4P09016 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
HOXD4P09016 RNU11-5P-201ENST00000391216 129 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC233266.1-201ENST00000454518 96 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 RNA5SP445-201ENST00000515889 115 ntBASIC1.36□□□□□ -2.19
HOXD4P09016 AC100821.1-201ENST00000523153 2479 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 165.1 ms