Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC133485.4-201ENST00000561835 220 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 AC138907.4-201ENST00000570107 226 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 MIR3613-201ENST00000579844 87 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 AL138880.2-201ENST00000616214 239 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 MIR3914-2-201ENST00000637339 95 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.33□□□□□ -2.04
COL3A1P02461 IL33-202ENST00000417746 2327 ntTSL 2 BASIC2.33□□□□□ -2.04
COL3A1P02461 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC2.33□□□□□ -2.04
COL3A1P02461 RNU6-674P-201ENST00000363831 107 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 Y_RNA.294-201ENST00000364916 102 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 MIR300-201ENST00000401138 83 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RNU2-49P-201ENST00000410666 184 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 AL158823.1-201ENST00000418441 478 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC2.33□□□□□ -2.04
COL3A1P02461 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.33□□□□□ -2.04
COL3A1P02461 RNU6-437P-201ENST00000459408 95 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 RNU6-197P-201ENST00000516680 100 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC2.33□□□□□ -2.04
COL3A1P02461 AC008739.2-201ENST00000597006 317 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 AC120024.3-201ENST00000603167 156 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 uc_338.14-201ENST00000613162 166 ntBASIC2.33□□□□□ -2.04
COL3A1P02461 SMARCAD1-201ENST00000354268 4912 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
COL3A1P02461 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC2.32□□□□□ -2.04
COL3A1P02461 RNU6-661P-201ENST00000362409 107 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 Y_RNA.120-201ENST00000363304 110 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 RNY1P11-201ENST00000363759 113 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 Y_RNA.309-201ENST00000365046 111 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 SNORA20B-201ENST00000384220 132 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 RNU6-198P-201ENST00000384258 104 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 SNORA12-201ENST00000391162 147 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 AL355796.1-201ENST00000406706 323 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 AC023449.1-201ENST00000454464 154 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 RNU7-57P-201ENST00000459540 60 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 KRTAP13-6P-201ENST00000508999 371 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 AC010598.1-201ENST00000510378 103 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 RNU6-1299P-201ENST00000516316 100 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.32□□□□□ -2.04
COL3A1P02461 AC108081.1-201ENST00000604358 221 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
COL3A1P02461 AC138915.1-201ENST00000565427 1685 ntBASIC2.32□□□□□ -2.04
COL3A1P02461 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC2.31□□□□□ -2.04
COL3A1P02461 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL3A1P02461 MIR378A-201ENST00000362177 66 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 RNU4-41P-201ENST00000364426 143 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 Y_RNA.432-201ENST00000384087 111 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 BTF3P4-201ENST00000418852 495 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 AL158147.1-201ENST00000443970 75 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 AC010099.1-201ENST00000455434 375 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 AC079760.1-201ENST00000456952 202 ntTSL 3 BASIC2.31□□□□□ -2.04
COL3A1P02461 NDUFA5P6-201ENST00000542110 379 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 MIR4419B-201ENST00000577260 68 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 AC006254.2-201ENST00000603259 279 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 AL670379.3-201ENST00000605040 251 ntBASIC2.31□□□□□ -2.04
COL3A1P02461 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
COL3A1P02461 MTND5P32-201ENST00000560711 1802 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 SNORA27.1-201ENST00000362604 124 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 U8.1-201ENST00000362843 134 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 Y_RNA.124-201ENST00000363339 93 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 SNORD116-13-201ENST00000384408 92 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 RNU6-136P-201ENST00000384663 107 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 RNA5SP489-201ENST00000410986 109 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 AP1B1P2-201ENST00000416196 106 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 HMGN2P16-201ENST00000456802 261 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 SNORD65B-201ENST00000459126 73 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 HMGN2P9-201ENST00000476875 229 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 VCAN-AS1-202ENST00000513899 453 ntTSL 3 BASIC2.3□□□□□ -2.04
COL3A1P02461 RNU6-772P-201ENST00000516042 105 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 RNU6-1098P-201ENST00000516772 96 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 AC079598.5-201ENST00000547460 117 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 AL160236.1-201ENST00000556317 195 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 MIR4448-201ENST00000584360 86 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 AC131055.1-201ENST00000584626 316 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 MIR4753-201ENST00000585119 83 ntBASIC2.3□□□□□ -2.04
COL3A1P02461 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL3A1P02461 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC2.29□□□□□ -2.04
COL3A1P02461 RNU6-147P-201ENST00000383983 107 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 MIR29B2-201ENST00000385055 81 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 SNORA40.5-201ENST00000391061 128 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 AP000567.1-201ENST00000406413 156 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 MIR1283-1-201ENST00000408494 87 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 RNA5SP270-201ENST00000411361 118 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 AC063976.4-201ENST00000421971 163 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC2.29□□□□□ -2.04
COL3A1P02461 AL359853.2-201ENST00000442108 353 ntTSL 2 BASIC2.29□□□□□ -2.04
COL3A1P02461 RNA5SP20-201ENST00000515976 84 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 AC026894.1-202ENST00000533843 477 ntTSL 5 BASIC2.29□□□□□ -2.04
COL3A1P02461 MIR8081-201ENST00000611533 95 ntBASIC2.29□□□□□ -2.04
COL3A1P02461 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC2.29□□□□□ -2.04
COL3A1P02461 Y_RNA.114-201ENST00000363265 113 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 RNA5SP190-201ENST00000365222 118 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 MIR548A3-201ENST00000385297 97 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 SUMO2P12-201ENST00000405924 140 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 RN7SKP101-201ENST00000411376 320 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 AC097463.2-201ENST00000421074 142 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC2.28□□□□□ -2.04
COL3A1P02461 RNU7-14P-201ENST00000459331 62 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 RPS26P55-201ENST00000471178 356 ntBASIC2.28□□□□□ -2.04
COL3A1P02461 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC2.28□□□□□ -2.04
COL3A1P02461 RNA5SP153-201ENST00000516498 76 ntBASIC2.28□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms