Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC211469.2-201ENST00000605461 205 ntBASIC0.98□□□□□ -2.25
SDC3O75056 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC0.98□□□□□ -2.25
SDC3O75056 MIR373-201ENST00000362273 69 ntBASIC0.97□□□□□ -2.25
SDC3O75056 Y_RNA.253-201ENST00000364562 112 ntBASIC0.97□□□□□ -2.25
SDC3O75056 Y_RNA.310-201ENST00000365063 113 ntBASIC0.97□□□□□ -2.25
SDC3O75056 Y_RNA.336-201ENST00000365307 109 ntBASIC0.97□□□□□ -2.25
SDC3O75056 Y_RNA.368-201ENST00000365547 113 ntBASIC0.97□□□□□ -2.25
SDC3O75056 MIR452-201ENST00000385020 85 ntBASIC0.97□□□□□ -2.25
SDC3O75056 MIR522-201ENST00000385071 87 ntBASIC0.97□□□□□ -2.25
SDC3O75056 MIR613-201ENST00000385248 95 ntBASIC0.97□□□□□ -2.25
SDC3O75056 Y_RNA.579-201ENST00000390939 94 ntBASIC0.97□□□□□ -2.25
SDC3O75056 SNORD12-201ENST00000391002 90 ntBASIC0.97□□□□□ -2.25
SDC3O75056 RPL39P39-201ENST00000455840 151 ntBASIC0.97□□□□□ -2.25
SDC3O75056 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.97□□□□□ -2.25
SDC3O75056 AC114811.1-201ENST00000507207 168 ntBASIC0.97□□□□□ -2.25
SDC3O75056 RNA5SP436-201ENST00000516020 115 ntBASIC0.97□□□□□ -2.25
SDC3O75056 RNA5SP480-201ENST00000516840 109 ntBASIC0.97□□□□□ -2.25
SDC3O75056 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC0.97□□□□□ -2.25
SDC3O75056 MIR3973-201ENST00000579824 107 ntBASIC0.97□□□□□ -2.25
SDC3O75056 MIR4795-201ENST00000584182 89 ntBASIC0.97□□□□□ -2.25
SDC3O75056 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC0.97□□□□□ -2.25
SDC3O75056 PVT1_3.1-201ENST00000620853 95 ntBASIC0.97□□□□□ -2.25
SDC3O75056 SNORD81.1-201ENST00000363064 77 ntBASIC0.96□□□□□ -2.26
SDC3O75056 Y_RNA.331-201ENST00000365267 102 ntBASIC0.96□□□□□ -2.26
SDC3O75056 AC117470.1-201ENST00000381974 330 ntBASIC0.96□□□□□ -2.26
SDC3O75056 Y_RNA.395-201ENST00000383945 109 ntBASIC0.96□□□□□ -2.26
SDC3O75056 Y_RNA.456-201ENST00000384232 111 ntBASIC0.96□□□□□ -2.26
SDC3O75056 Y_RNA.551-201ENST00000384661 102 ntBASIC0.96□□□□□ -2.26
SDC3O75056 MIR19B1-201ENST00000384829 87 ntBASIC0.96□□□□□ -2.26
SDC3O75056 MIR7-2-201ENST00000384970 110 ntBASIC0.96□□□□□ -2.26
SDC3O75056 PIGPP3-201ENST00000425307 415 ntBASIC0.96□□□□□ -2.26
SDC3O75056 LINC01399-202ENST00000458450 244 ntBASIC0.96□□□□□ -2.26
SDC3O75056 U8.20-201ENST00000459445 131 ntBASIC0.96□□□□□ -2.26
SDC3O75056 UBL5P1-201ENST00000507979 193 ntBASIC0.96□□□□□ -2.26
SDC3O75056 RNU7-116P-201ENST00000516940 62 ntBASIC0.96□□□□□ -2.26
SDC3O75056 HSPE1P19-201ENST00000603327 295 ntBASIC0.96□□□□□ -2.26
SDC3O75056 AL080274.1-201ENST00000605565 220 ntBASIC0.96□□□□□ -2.26
SDC3O75056 AL133255.1-201ENST00000606374 441 ntBASIC0.96□□□□□ -2.26
SDC3O75056 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
SDC3O75056 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
SDC3O75056 Y_RNA.804-201ENST00000615262 101 ntBASIC0.96□□□□□ -2.26
SDC3O75056 AC012676.2-201ENST00000619258 186 ntBASIC0.96□□□□□ -2.26
SDC3O75056 AL008636.1-201ENST00000625038 1018 ntBASIC0.96□□□□□ -2.26
SDC3O75056 RNU4-50P-201ENST00000364361 141 ntBASIC0.95□□□□□ -2.26
SDC3O75056 Y_RNA.439-201ENST00000384119 94 ntBASIC0.95□□□□□ -2.26
SDC3O75056 Y_RNA.540-201ENST00000384638 111 ntBASIC0.95□□□□□ -2.26
SDC3O75056 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.95□□□□□ -2.26
SDC3O75056 RNU6-855P-201ENST00000410395 104 ntBASIC0.95□□□□□ -2.26
SDC3O75056 MTATP6P23-201ENST00000440153 476 ntBASIC0.95□□□□□ -2.26
SDC3O75056 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.95□□□□□ -2.26
SDC3O75056 AL117351.2-201ENST00000513571 157 ntBASIC0.95□□□□□ -2.26
SDC3O75056 SNORD79.1-201ENST00000516069 84 ntBASIC0.95□□□□□ -2.26
SDC3O75056 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC0.95□□□□□ -2.26
SDC3O75056 AC136932.1-201ENST00000574771 208 ntBASIC0.95□□□□□ -2.26
SDC3O75056 MIR4698-201ENST00000577795 80 ntBASIC0.95□□□□□ -2.26
SDC3O75056 AP001094.1-201ENST00000579805 193 ntBASIC0.95□□□□□ -2.26
SDC3O75056 AC011373.1-201ENST00000607270 237 ntBASIC0.95□□□□□ -2.26
SDC3O75056 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.95□□□□□ -2.26
SDC3O75056 AL442644.1-201ENST00000454390 3105 ntBASIC0.95□□□□□ -2.26
SDC3O75056 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.94□□□□□ -2.26
SDC3O75056 Y_RNA.341-201ENST00000365341 102 ntBASIC0.94□□□□□ -2.26
SDC3O75056 MIR1302-11-201ENST00000408051 138 ntBASIC0.94□□□□□ -2.26
SDC3O75056 MIR1302-9-201ENST00000408365 138 ntBASIC0.94□□□□□ -2.26
SDC3O75056 MIR1302-10-201ENST00000408734 138 ntBASIC0.94□□□□□ -2.26
SDC3O75056 MIR1298-201ENST00000408783 112 ntBASIC0.94□□□□□ -2.26
SDC3O75056 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.94□□□□□ -2.26
SDC3O75056 AC024067.1-201ENST00000426199 223 ntBASIC0.94□□□□□ -2.26
SDC3O75056 HMGN1P10-201ENST00000474557 553 ntBASIC0.94□□□□□ -2.26
SDC3O75056 MIR1302-2-201ENST00000607096 138 ntBASIC0.94□□□□□ -2.26
SDC3O75056 uc_338.22-201ENST00000622722 187 ntBASIC0.94□□□□□ -2.26
SDC3O75056 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
SDC3O75056 AL391516.1-201ENST00000554380 2449 ntBASIC0.94□□□□□ -2.26
SDC3O75056 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.93□□□□□ -2.26
SDC3O75056 Y_RNA.80-201ENST00000362996 102 ntBASIC0.93□□□□□ -2.26
SDC3O75056 Y_RNA.363-201ENST00000365529 113 ntBASIC0.93□□□□□ -2.26
SDC3O75056 Y_RNA.485-201ENST00000384395 102 ntBASIC0.93□□□□□ -2.26
SDC3O75056 MIR598-201ENST00000384868 97 ntBASIC0.93□□□□□ -2.26
SDC3O75056 AC063976.4-201ENST00000421971 163 ntBASIC0.93□□□□□ -2.26
SDC3O75056 MTND1P14-201ENST00000427400 950 ntBASIC0.93□□□□□ -2.26
SDC3O75056 RNU6-1170P-201ENST00000515974 106 ntBASIC0.93□□□□□ -2.26
SDC3O75056 SNORD111.1-201ENST00000516421 86 ntBASIC0.93□□□□□ -2.26
SDC3O75056 SNORD45.4-201ENST00000516629 73 ntBASIC0.93□□□□□ -2.26
SDC3O75056 RNU7-110P-201ENST00000516891 62 ntBASIC0.93□□□□□ -2.26
SDC3O75056 AC040926.1-201ENST00000530195 238 ntBASIC0.93□□□□□ -2.26
SDC3O75056 DEFB117-201ENST00000602356 141 ntBASIC0.93□□□□□ -2.26
SDC3O75056 AP003357.1-201ENST00000604497 148 ntBASIC0.93□□□□□ -2.26
SDC3O75056 PRELID3BP2-201ENST00000605362 201 ntBASIC0.93□□□□□ -2.26
SDC3O75056 AL096861.1-201ENST00000610899 123 ntBASIC0.93□□□□□ -2.26
SDC3O75056 AC006157.1-201ENST00000611750 366 ntBASIC0.93□□□□□ -2.26
SDC3O75056 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.93□□□□□ -2.26
SDC3O75056 SNORD14.1-201ENST00000365609 90 ntBASIC0.92□□□□□ -2.26
SDC3O75056 Y_RNA.431-201ENST00000384086 102 ntBASIC0.92□□□□□ -2.26
SDC3O75056 SNORA80D-201ENST00000384488 135 ntBASIC0.92□□□□□ -2.26
SDC3O75056 MIR15B-201ENST00000385045 98 ntBASIC0.92□□□□□ -2.26
SDC3O75056 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.92□□□□□ -2.26
SDC3O75056 HMGN2P32-201ENST00000444648 269 ntBASIC0.92□□□□□ -2.26
SDC3O75056 Y_RNA.639-201ENST00000458981 102 ntBASIC0.92□□□□□ -2.26
SDC3O75056 Y_RNA.714-201ENST00000517065 90 ntBASIC0.92□□□□□ -2.26
SDC3O75056 POLR3GP1-201ENST00000594073 261 ntBASIC0.92□□□□□ -2.26
SDC3O75056 AL391903.3-201ENST00000612158 163 ntBASIC0.92□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 187.3 ms