Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 MTND4LP30-201ENST00000454092 297 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 AC005840.1-201ENST00000498412 377 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 RNU6-1153P-201ENST00000516760 105 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 AC136628.3-201ENST00000521868 290 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 CYP3A52P-201ENST00000563326 91 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 MIR4781-201ENST00000585250 76 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 MIR548AY-201ENST00000617669 107 ntBASIC1.54□□□□□ -2.16
HOXC11O43248 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.53□□□□□ -2.16
HOXC11O43248 U8.5-201ENST00000364528 136 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 Y_RNA.581-201ENST00000391017 97 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 SNORA53-201ENST00000391141 249 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.53□□□□□ -2.16
HOXC11O43248 HSPE1P25-201ENST00000455484 251 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 AC114811.1-201ENST00000507207 168 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 RNU7-115P-201ENST00000516433 55 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 MIR4762-201ENST00000585261 75 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 AL512605.2-201ENST00000592972 256 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 ZNF209P-201ENST00000593450 2304 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 GHRLOS.1-201ENST00000610995 70 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 JPX_2.1-201ENST00000614161 69 ntBASIC1.53□□□□□ -2.16
HOXC11O43248 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
HOXC11O43248 Y_RNA.214-201ENST00000364201 112 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 U8.7-201ENST00000364940 136 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 Y_RNA.422-201ENST00000384054 114 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 RNU6-514P-201ENST00000384208 107 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 RNU6-102P-201ENST00000384485 104 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 MIR653-201ENST00000385279 96 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.52□□□□□ -2.17
HOXC11O43248 ELOCP20-201ENST00000422460 345 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 AL354695.1-201ENST00000427935 228 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 SNRPGP10-201ENST00000432323 225 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 TRMT112P2-201ENST00000512910 132 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 RNU6-191P-201ENST00000516295 94 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 AC127455.1-201ENST00000565496 145 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 MIR4421-201ENST00000578133 69 ntBASIC1.52□□□□□ -2.17
HOXC11O43248 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC1.52□□□□□ -2.17
HOXC11O43248 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.52□□□□□ -2.17
HOXC11O43248 Y_RNA.136-201ENST00000363444 102 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 Y_RNA.203-201ENST00000364106 102 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 snoU2-30.1-201ENST00000365012 70 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 RNU6-290P-201ENST00000365212 101 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 MIR452-201ENST00000385020 85 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 MIR522-201ENST00000385071 87 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 RNU6-985P-201ENST00000410182 104 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 AC104332.1-201ENST00000440471 797 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 LINC01399-202ENST00000458450 244 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 AL357312.1-201ENST00000603879 298 ntBASIC1.51□□□□□ -2.17
HOXC11O43248 NAA50-211ENST00000630058 177 ntTSL 5 BASIC1.51□□□□□ -2.17
HOXC11O43248 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
HOXC11O43248 AL391987.6-201ENST00000305671 199 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 MIR337-201ENST00000362281 93 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 SNORA7.1-201ENST00000363750 139 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 Y_RNA.418-201ENST00000384029 102 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.5□□□□□ -2.17
HOXC11O43248 RNU7-141P-201ENST00000459304 62 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 MRPS35P2-201ENST00000508242 191 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 RNU6-917P-201ENST00000516294 104 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 MIR2681-201ENST00000581814 105 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 AC007742.2-201ENST00000618226 398 ntBASIC1.5□□□□□ -2.17
HOXC11O43248 SNORA25.1-201ENST00000362326 128 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 Y_RNA.105-201ENST00000363182 111 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 SNORA72.4-201ENST00000384174 132 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 MIR1304-201ENST00000408243 91 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 RNU6-121P-201ENST00000410525 99 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 DYNLT3P2-201ENST00000442517 295 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 HMGN2P32-201ENST00000444648 269 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 SNORD45.4-201ENST00000516629 73 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 RNU2-31P-201ENST00000516954 155 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.49□□□□□ -2.17
HOXC11O43248 FAM106DP-201ENST00000586416 501 ntBASIC1.49□□□□□ -2.17
HOXC11O43248 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.49□□□□□ -2.17
HOXC11O43248 AP000648.3-201ENST00000623539 4507 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 RNU6-392P-201ENST00000364926 101 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 MIR802-201ENST00000390235 94 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.48□□□□□ -2.17
HOXC11O43248 SNORA36B-201ENST00000410438 131 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 RNA5SP247-201ENST00000411181 105 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 RPL39P39-201ENST00000455840 151 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 RNU6-437P-201ENST00000459408 95 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 AC098869.1-201ENST00000481627 292 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 RNU6-947P-201ENST00000516264 106 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 RNU1-92P-201ENST00000517017 135 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 RNU6-1137P-201ENST00000517073 99 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 AP003733.2-201ENST00000529409 171 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 AL442663.2-201ENST00000554385 511 ntBASIC1.48□□□□□ -2.17
HOXC11O43248 MIR26B-201ENST00000362251 77 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 SNORA63-201ENST00000363450 132 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 Y_RNA.153-201ENST00000363615 91 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 RNU6-899P-201ENST00000363947 107 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 RNU6-1048P-201ENST00000364054 107 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 RNU6-801P-201ENST00000364087 105 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 Y_RNA.327-201ENST00000365201 102 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 SNORD26-201ENST00000384147 75 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 MTCO2P33-201ENST00000402100 465 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.47□□□□□ -2.17
HOXC11O43248 MTCO1P5-201ENST00000433573 344 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 AL731563.1-201ENST00000442202 214 ntBASIC1.47□□□□□ -2.17
HOXC11O43248 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
HOXC11O43248 AC006504.6-201ENST00000590142 199 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 112.7 ms