Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 MIR378A-201ENST00000362177 66 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 Y_RNA.16-201ENST00000362421 102 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 RNU6-1084P-201ENST00000362498 107 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 Y_RNA.152-201ENST00000363578 100 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 Y_RNA.222-201ENST00000364264 102 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 SNORD26-201ENST00000384147 75 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 Y_RNA.512-201ENST00000384518 102 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 MIR1278-201ENST00000408753 81 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 AP1B1P2-201ENST00000416196 106 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 MTCO1P5-201ENST00000433573 344 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 SNRPGP13-201ENST00000442212 177 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 AC245517.4-201ENST00000448601 281 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 RNU7-141P-201ENST00000459304 62 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 RNU6-947P-201ENST00000516264 106 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 RNU6-917P-201ENST00000516294 104 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 RNU6-570P-201ENST00000517051 105 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 AP003733.2-201ENST00000529409 171 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 AC008269.2-201ENST00000561915 1105 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 AC009093.3-203ENST00000565800 121 ntTSL 2 BASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 AC120024.3-201ENST00000603167 156 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 snoU13.31-201ENST00000607291 104 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 MIR548AY-201ENST00000617669 107 ntBASIC1.22□□□□□ -2.21
NKX6-3A6NJ46 RNU6-801P-201ENST00000364087 105 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 MIR320A-201ENST00000385302 82 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 Y_RNA.581-201ENST00000391017 97 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 SNORA26.5-201ENST00000391215 123 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 MIR891A-201ENST00000401237 79 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 SNRPGP10-201ENST00000432323 225 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 RNU7-115P-201ENST00000516433 55 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 SCARNA24.2-201ENST00000516968 130 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 AL512310.8-201ENST00000550183 120 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 DNAJC19P9-201ENST00000555084 351 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 AL512598.1-201ENST00000610158 273 ntBASIC1.21□□□□□ -2.22
NKX6-3A6NJ46 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 MIR26B-201ENST00000362251 77 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 RNU6-238P-201ENST00000363313 106 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 SNORA63-201ENST00000363450 132 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 RNU6-290P-201ENST00000365212 101 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 RNU6-1323P-201ENST00000384025 107 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 RNU7-95P-201ENST00000459222 64 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 HMGN1P7-201ENST00000491722 313 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 CYCTP-201ENST00000504253 315 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 RN7SKP88-201ENST00000516847 250 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 RNU7-116P-201ENST00000516940 62 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 AC136628.3-201ENST00000521868 290 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 AL161670.1-201ENST00000554348 137 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 FAM106DP-201ENST00000586416 501 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 AL512605.2-201ENST00000592972 256 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 AP003357.1-201ENST00000604497 148 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 7SK.8-201ENST00000612110 250 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 7SK.11-201ENST00000615477 250 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 7SK.13-201ENST00000622040 250 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 ZNF209P-201ENST00000593450 2304 ntBASIC1.2□□□□□ -2.22
NKX6-3A6NJ46 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 SNORA25.1-201ENST00000362326 128 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 Y_RNA.203-201ENST00000364106 102 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 Y_RNA.326-201ENST00000365176 113 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 SNORA72.4-201ENST00000384174 132 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 RNU6-514P-201ENST00000384208 107 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 RNU6-662P-201ENST00000384253 104 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 MIR522-201ENST00000385071 87 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 MIR516B2-201ENST00000385190 85 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 RNU6-763P-201ENST00000390865 106 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 SNORA36B-201ENST00000410438 131 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 RNU6-635P-201ENST00000516651 102 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 AC127455.1-201ENST00000565496 145 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 MIR3664-201ENST00000579074 99 ntBASIC1.19□□□□□ -2.22
NKX6-3A6NJ46 Y_RNA.338-201ENST00000365320 114 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 RNU6-1011P-201ENST00000384668 107 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 MIR526A1-201ENST00000384897 85 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 RNU6-1248P-201ENST00000391096 64 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 SNORA53-201ENST00000391141 249 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 RNU6-131P-201ENST00000391144 107 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 AC009474.2-201ENST00000451383 136 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 U8.19-201ENST00000459095 133 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 RPL39P38-201ENST00000467018 153 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 SNORD45.4-201ENST00000516629 73 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 RNU2-31P-201ENST00000516954 155 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 AC006504.6-201ENST00000590142 199 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 JPX_2.1-201ENST00000614161 69 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 AC011604.2-202ENST00000540229 2451 ntAPPRIS P5 TSL 2 BASIC1.18□□□□□ -2.22
NKX6-3A6NJ46 ZNF260-205ENST00000593142 4047 ntAPPRIS P1 TSL 1 (best) BASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 U8.1-201ENST00000362843 134 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 Y_RNA.84-201ENST00000363011 104 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 Y_RNA.136-201ENST00000363444 102 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 AL451046.2-201ENST00000403074 277 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 AC091959.1-201ENST00000495857 238 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 RNU6-322P-201ENST00000516010 103 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 DEFB108E-201ENST00000524692 240 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 hsa-mir-548d-2.1-201ENST00000582790 97 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 AC005357.1-201ENST00000588399 301 ntBASIC1.17□□□□□ -2.22
NKX6-3A6NJ46 AC037487.3-201ENST00000606668 112 ntBASIC1.17□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 135.5 ms