Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 MIR548P-201ENST00000408336 84 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 RNU6-855P-201ENST00000410395 104 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 RNU6-321P-201ENST00000410912 106 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 AC093850.1-201ENST00000454121 251 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 RPL39P38-201ENST00000467018 153 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 RNU6-397P-201ENST00000516226 104 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 RNU6-1116P-201ENST00000517269 99 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 AC022616.4-201ENST00000522985 181 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 AC011604.1-201ENST00000545978 196 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 AC008269.2-201ENST00000561915 1105 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 MIR3145-201ENST00000580727 82 ntBASIC1.36□□□□□ -2.19
CPSF3Q9UKF6 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 MIR26B-201ENST00000362251 77 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 RNU4-76P-201ENST00000364509 141 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.310-201ENST00000365063 113 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 RNU6-21P-201ENST00000384710 107 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 AC005840.1-201ENST00000498412 377 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 RNU6-988P-201ENST00000519081 107 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 AC020661.2-201ENST00000560114 134 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 AC005972.2-201ENST00000604690 348 ntBASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
CPSF3Q9UKF6 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.327-201ENST00000365201 102 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 SNORA63.7-201ENST00000365579 123 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 RNU6-710P-201ENST00000410424 105 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 Y_RNA.621-201ENST00000411065 96 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 RNU6-1053P-201ENST00000515930 101 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 CYP3A52P-201ENST00000563326 91 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 MIR3664-201ENST00000579074 99 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 MIR4300-201ENST00000581016 96 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 MIR3171-201ENST00000584270 74 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 AL591926.4-201ENST00000616895 298 ntBASIC1.34□□□□□ -2.19
CPSF3Q9UKF6 DENND4A-209ENST00000635620 5887 ntTSL 5 BASIC1.34□□□□□ -2.2
CPSF3Q9UKF6 RNU6-199P-201ENST00000362954 107 ntBASIC1.33□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.368-201ENST00000365547 113 ntBASIC1.33□□□□□ -2.2
CPSF3Q9UKF6 MIR1252-201ENST00000408861 65 ntBASIC1.33□□□□□ -2.2
CPSF3Q9UKF6 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.33□□□□□ -2.2
CPSF3Q9UKF6 RNU7-12P-201ENST00000516030 62 ntBASIC1.33□□□□□ -2.2
CPSF3Q9UKF6 RNU6-917P-201ENST00000516294 104 ntBASIC1.33□□□□□ -2.2
CPSF3Q9UKF6 RNU6-897P-201ENST00000517135 105 ntBASIC1.33□□□□□ -2.2
CPSF3Q9UKF6 SNORD68-201ENST00000363214 84 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.183-201ENST00000363882 113 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 RNU6-392P-201ENST00000364926 101 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.341-201ENST00000365341 102 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.383-201ENST00000383855 97 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.389-201ENST00000383924 113 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 RNU6-102P-201ENST00000384485 104 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 MIR653-201ENST00000385279 96 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 MIR618-201ENST00000385287 98 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 RNU6-101P-201ENST00000410323 104 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 HMGN1P10-201ENST00000474557 553 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 TRMT112P2-201ENST00000512910 132 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 RNU6-922P-201ENST00000516753 99 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 RNU6-165P-201ENST00000517170 99 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 SNORD113-5-201ENST00000607261 78 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 MIR376A1-201ENST00000616574 68 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 AC068647.2-201ENST00000637380 353 ntBASIC1.32□□□□□ -2.2
CPSF3Q9UKF6 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.105-201ENST00000363182 111 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 SNORD113-8-201ENST00000363497 74 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 U8.5-201ENST00000364528 136 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.253-201ENST00000364562 112 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 RNU6-53P-201ENST00000365367 106 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.456-201ENST00000384232 111 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 SNORA72-201ENST00000384339 132 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 SNORD41-201ENST00000386967 70 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 SEPT14P8-201ENST00000508026 178 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.721-201ENST00000517207 102 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 AC120024.3-201ENST00000603167 156 ntBASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.31□□□□□ -2.2
CPSF3Q9UKF6 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 RNU4-80P-201ENST00000363200 141 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.158-201ENST00000363651 101 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.222-201ENST00000364264 102 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 RNU6-1323P-201ENST00000384025 107 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 SNORD115-46-201ENST00000390982 71 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 RNU6-121P-201ENST00000410525 99 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 AL135923.1-201ENST00000413066 196 ntTSL 3 BASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 PIGPP3-201ENST00000425307 415 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 POLR2KP2-201ENST00000438155 177 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 MTCYBP6-201ENST00000441810 138 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 DYNLT3P2-201ENST00000442517 295 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 HSPE1P25-201ENST00000455484 251 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 Y_RNA.701-201ENST00000516812 110 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 MIR4680-201ENST00000580906 66 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 MIR4762-201ENST00000585261 75 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 AL513534.2-201ENST00000603836 250 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 MIR8065-201ENST00000620577 100 ntBASIC1.3□□□□□ -2.2
CPSF3Q9UKF6 SNORA25.8-201ENST00000364831 128 ntBASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 187.6 ms