Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 RNU6-833P-201ENST00000363486 107 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 RNU4-38P-201ENST00000364472 129 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.252-201ENST00000364556 101 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 SNORA70.7-201ENST00000384159 133 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 RNU6-163P-201ENST00000384396 106 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 Y_RNA.570-201ENST00000384750 101 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 RNU6-1105P-201ENST00000384774 107 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 AL160004.2-201ENST00000432935 350 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 RPL39P39-201ENST00000455840 151 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 CYCTP-201ENST00000504253 315 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.03□□□□□ -2.24
LHX3Q9UBR4 RPS29P30-201ENST00000600975 111 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 AC120024.3-201ENST00000603167 156 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 AL591926.4-201ENST00000616895 298 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 AL606534.2-204ENST00000635008 178 ntBASIC1.03□□□□□ -2.24
LHX3Q9UBR4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.03□□□□□ -2.24
LHX3Q9UBR4 RNU4-79P-201ENST00000362764 141 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.269-201ENST00000364685 89 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.458-201ENST00000384240 102 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 MIR1276-201ENST00000408707 83 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 MCFD2P1-201ENST00000417812 300 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 CCDC68-202ENST00000432185 4014 ntAPPRIS P1 TSL 1 (best) BASIC1.02□□□□□ -2.25
LHX3Q9UBR4 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.02□□□□□ -2.25
LHX3Q9UBR4 AC048334.1-201ENST00000477975 159 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 SNORA25.10-201ENST00000515926 124 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 RNU6-976P-201ENST00000516086 111 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 SNORD116-28-201ENST00000516123 91 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.772-201ENST00000606692 102 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 AC006157.1-201ENST00000611750 366 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 AC027279.3-201ENST00000625055 122 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 MIR6767-201ENST00000637302 66 ntBASIC1.02□□□□□ -2.25
LHX3Q9UBR4 MGAT4C-209ENST00000611864 25116 ntAPPRIS P1 TSL 5 BASIC1.01□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.331-201ENST00000365267 102 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 RNY1P14-201ENST00000384426 108 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 MIR526A1-201ENST00000384897 85 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 RNU6-910P-201ENST00000390844 107 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 RNU6-855P-201ENST00000410395 104 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 MLLT10P1-201ENST00000418346 262 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.01□□□□□ -2.25
LHX3Q9UBR4 AC245047.7-201ENST00000440265 293 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 RPS20P10-201ENST00000451209 253 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 AC005042.3-201ENST00000453230 174 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 AC114811.1-201ENST00000507207 168 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 AC022616.4-201ENST00000522985 181 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 FAM106DP-201ENST00000586416 501 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 AC005972.2-201ENST00000604690 348 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 AC010205.1-201ENST00000616668 449 ntBASIC1.01□□□□□ -2.25
LHX3Q9UBR4 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC1□□□□□ -2.25
LHX3Q9UBR4 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1□□□□□ -2.25
LHX3Q9UBR4 RNU1-124P-201ENST00000363861 145 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.197-201ENST00000364004 102 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 RNU1-115P-201ENST00000365329 160 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 RPS29P28-201ENST00000446439 141 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 LINC01399-202ENST00000458450 244 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 SNORA40.14-201ENST00000516543 86 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 RNU7-110P-201ENST00000516891 62 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 AL121655.1-201ENST00000605811 308 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 AC007485.1-201ENST00000616755 206 ntBASIC1□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.143-201ENST00000363520 106 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 RNU6-937P-201ENST00000384325 106 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 MIR518E-201ENST00000385252 88 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 MT-TD-201ENST00000387419 68 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 RNU4-30P-201ENST00000410245 143 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 OR2A41P-201ENST00000473586 105 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 RPS23P4-201ENST00000487908 423 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 MIR3145-201ENST00000580727 82 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 MIR4423-201ENST00000580922 80 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 DEFB117-201ENST00000602356 141 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 AC011373.1-201ENST00000607270 237 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 AL138825.1-201ENST00000618587 192 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 AL008636.1-201ENST00000625038 1018 ntBASIC0.99□□□□□ -2.25
LHX3Q9UBR4 SNORD81.1-201ENST00000363064 77 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.253-201ENST00000364562 112 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.419-201ENST00000384041 102 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 AL590004.1-201ENST00000405321 300 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.98□□□□□ -2.25
LHX3Q9UBR4 MTATP6P23-201ENST00000440153 476 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 MIR4762-201ENST00000585261 75 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 AL080274.1-201ENST00000605565 220 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 AL133255.1-201ENST00000606374 441 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 MIR6504-201ENST00000613520 61 ntBASIC0.98□□□□□ -2.25
LHX3Q9UBR4 MIR369-201ENST00000362155 70 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.122-201ENST00000363331 96 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.224-201ENST00000364308 111 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 U8.5-201ENST00000364528 136 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 RNU1-93P-201ENST00000364704 169 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.341-201ENST00000365341 102 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.439-201ENST00000384119 94 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.462-201ENST00000384268 102 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 Y_RNA.471-201ENST00000384312 102 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 MIR452-201ENST00000385020 85 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 RNU6-308P-201ENST00000390957 107 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 SNORD12-201ENST00000391002 90 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 RNU6-710P-201ENST00000410424 105 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 U8.19-201ENST00000459095 133 ntBASIC0.97□□□□□ -2.25
LHX3Q9UBR4 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.97□□□□□ -2.25
LHX3Q9UBR4 AC040926.1-201ENST00000530195 238 ntBASIC0.97□□□□□ -2.25
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms