Protein–RNA interactions for Protein: Q9NXS3

KLHL28, Kelch-like protein 28, humanhuman

Predictions only

Length 571 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KLHL28Q9NXS3 AC096644.2-201ENST00000429278 159 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AC073127.1-201ENST00000447336 333 ntTSL 3 BASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 CHEK2P4-201ENST00000450340 246 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AC245047.8-201ENST00000456455 284 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 RNU7-90P-201ENST00000459216 62 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 RNU6-1337P-201ENST00000516525 95 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 SNORA20.3-201ENST00000516880 132 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 RNU6-264P-201ENST00000517134 104 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 MIR2355-201ENST00000517199 87 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AC113139.1-201ENST00000605049 239 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 AC138305.3-201ENST00000624988 240 ntBASIC0.72□□□□□ -2.29
KLHL28Q9NXS3 RNU6-1283P-201ENST00000365314 105 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 RNU6-1310P-201ENST00000384153 107 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 SNORD116-29-201ENST00000384516 83 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 MIR520G-201ENST00000385064 90 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 MIR559-201ENST00000385188 96 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 RNU6-1199P-201ENST00000411249 104 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 AC098614.3-201ENST00000438957 440 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 ELOCP24-201ENST00000456370 334 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.653-201ENST00000459091 95 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 RNU6-1132P-201ENST00000459214 107 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 SNORA70.12-201ENST00000516084 153 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 RNU6-277P-201ENST00000516272 106 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 RNA5SP255-201ENST00000516370 107 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 DEFB108E-201ENST00000524692 240 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 AL391903.3-201ENST00000612158 163 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 AC106800.4-201ENST00000614905 153 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 AC240442.1-201ENST00000616055 283 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 AC099654.14-201ENST00000638599 341 ntBASIC0.71□□□□□ -2.3
KLHL28Q9NXS3 RNU6-626P-201ENST00000363354 107 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.314-201ENST00000365114 102 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 RNU6-20P-201ENST00000384106 107 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 MIR605-201ENST00000385078 83 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 AL031003.1-201ENST00000404229 172 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.605-201ENST00000410577 105 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 PIGPP3-201ENST00000425307 415 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 AC004941.2-201ENST00000427009 228 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 AL162725.1-201ENST00000435405 301 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 SNORA25.10-201ENST00000515926 124 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 RNU6-1012P-201ENST00000516606 109 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 RNA5SP480-201ENST00000516840 109 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 AL358944.1-201ENST00000528537 144 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 MIR4714-201ENST00000580728 77 ntBASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.7□□□□□ -2.3
KLHL28Q9NXS3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 SNORD114-7-201ENST00000362520 77 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 SNORD68-201ENST00000363214 84 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 RNU6-833P-201ENST00000363486 107 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.142-201ENST00000363491 102 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 RNY3P4-201ENST00000384428 101 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 RNU6-342P-201ENST00000384521 104 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 RNU2-54P-201ENST00000410299 190 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 FCF1P4-201ENST00000448326 183 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 SUMO1P2-201ENST00000452524 304 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 SNORD111.1-201ENST00000516421 86 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 RNU7-4P-201ENST00000516961 62 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 RNU6-699P-201ENST00000517081 110 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 AC144568.1-201ENST00000520139 137 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 MIR4659A-201ENST00000580269 81 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 AC025253.1-201ENST00000613623 543 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 AL008636.1-201ENST00000625038 1018 ntBASIC0.69□□□□□ -2.3
KLHL28Q9NXS3 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 HSBP1P2-201ENST00000299671 229 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 RNU1-133P-201ENST00000364867 167 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.446-201ENST00000384178 104 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.540-201ENST00000384638 111 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 MIR891A-201ENST00000401237 79 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.621-201ENST00000411065 96 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 AC114811.1-201ENST00000507207 168 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 RNU6-436P-201ENST00000516171 114 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 AC133485.1-201ENST00000567176 124 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 AC138907.6-201ENST00000568401 126 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 MIR3192-201ENST00000584920 77 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 AC005176.2-201ENST00000596933 147 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 AC120024.3-201ENST00000603167 156 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 AC084781.2-201ENST00000615568 161 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 AL591926.4-201ENST00000616895 298 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 U2.1-201ENST00000618978 145 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 MIR6835-201ENST00000621552 64 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 U6.92-201ENST00000636464 89 ntBASIC0.68□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.259-201ENST00000364619 101 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 Y_RNA.303-201ENST00000364998 94 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 RNU6-1297P-201ENST00000384415 104 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 RNU6-1105P-201ENST00000384774 107 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 MIR7-2-201ENST00000384970 110 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 SNORD78.2-201ENST00000391076 69 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 RNY4P36-201ENST00000391116 96 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 RNU2-61P-201ENST00000411069 191 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 RPS26P5-201ENST00000418544 335 ntBASIC0.67□□□□□ -2.3
KLHL28Q9NXS3 MTND5P15-201ENST00000434246 349 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 188.8 ms