Protein–RNA interactions for Protein: Q9NUD5

ZCCHC3, Zinc finger CCHC domain-containing protein 3, humanhuman

Known RBP Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZCCHC3Q9NUD5 RNU6-855P-201ENST00000410395 104 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 AL390729.2-201ENST00000416137 156 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 SNORD124-201ENST00000459577 104 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 HMGN1P7-201ENST00000491722 313 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 RNU4ATAC11P-201ENST00000515939 126 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 MIR4661-201ENST00000582720 75 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 AC092447.9-201ENST00000603395 144 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 DLEU2_2.2-201ENST00000615474 90 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 AL138825.1-201ENST00000618587 192 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 HS1BP3-208ENST00000631166 78 ntTSL 5 BASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 AC008163.1-202ENST00000636004 2889 ntBASIC0.94□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.39-201ENST00000362620 98 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 RNU4-38P-201ENST00000364472 129 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.252-201ENST00000364556 101 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.263-201ENST00000364659 114 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 SNORD114-24-201ENST00000365029 72 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.310-201ENST00000365063 113 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 RNU1-115P-201ENST00000365329 160 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-1323P-201ENST00000384025 107 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 MIR200A-201ENST00000384875 90 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 MIR516B2-201ENST00000385190 85 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 MIR136-201ENST00000385207 82 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 RPL23AP36-201ENST00000413895 458 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 MLLT10P1-201ENST00000418346 262 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 SNORD45.4-201ENST00000516629 73 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 RNU4-77P-201ENST00000516692 156 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 SNORA74.3-201ENST00000517108 154 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 AC090142.3-201ENST00000519012 385 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 MIR5188-201ENST00000583467 113 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 AL121655.1-201ENST00000605811 308 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.772-201ENST00000606692 102 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 AC104985.2-201ENST00000620598 500 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 AC091895.1-201ENST00000624494 256 ntBASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.93□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-1084P-201ENST00000362498 107 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 snoU2-30.1-201ENST00000365012 70 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-53P-201ENST00000365367 106 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.368-201ENST00000365547 113 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.458-201ENST00000384240 102 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.529-201ENST00000384586 119 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-1009P-201ENST00000390996 107 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 AF228730.4-201ENST00000421457 183 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 RNU7-90P-201ENST00000459216 62 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.92□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.5-201ENST00000362334 102 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 SNORD81.1-201ENST00000363064 77 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.331-201ENST00000365267 102 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.341-201ENST00000365341 102 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.456-201ENST00000384232 111 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 MIR15B-201ENST00000385045 98 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 RNU6-131P-201ENST00000391144 107 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 SNRPGP10-201ENST00000432323 225 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 AL160004.2-201ENST00000432935 350 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 AC092473.1-201ENST00000441098 221 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 HMGN2P32-201ENST00000444648 269 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 Y_RNA.661-201ENST00000516003 99 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 SNORA40.14-201ENST00000516543 86 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 RNU7-116P-201ENST00000516940 62 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 AP003716.2-201ENST00000528260 108 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 AC103810.9-201ENST00000606688 112 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 AL606534.2-204ENST00000635008 178 ntBASIC0.91□□□□□ -2.26
ZCCHC3Q9NUD5 RNA5SP264-201ENST00000363115 107 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 RNU6-1187P-201ENST00000364771 110 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 SNORD50B-201ENST00000364995 70 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 POLR2J4-204ENST00000418424 324 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 AC236972.2-201ENST00000434979 310 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 RPL39P28-201ENST00000465655 155 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 COX6CP14-201ENST00000469580 174 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 RNU6-976P-201ENST00000516086 111 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 Y_RNA.714-201ENST00000517065 90 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 AC093027.1-201ENST00000546698 429 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 AC136932.1-201ENST00000574771 208 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 RPS29P30-201ENST00000600975 111 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 DEFB117-201ENST00000602356 141 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 AP003357.1-201ENST00000604497 148 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 AC011373.1-201ENST00000607270 237 ntBASIC0.9□□□□□ -2.27
ZCCHC3Q9NUD5 RNU1-36P-201ENST00000365130 165 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 Y_RNA.356-201ENST00000365475 113 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 SNORD63-201ENST00000384262 68 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 MIR520C-201ENST00000385005 87 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 AL590004.1-201ENST00000405321 300 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 MTND5P20-201ENST00000448677 143 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 RNU6-507P-201ENST00000516045 100 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 POLR3GP1-201ENST00000594073 261 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 SNORD58B-201ENST00000607313 66 ntBASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
ZCCHC3Q9NUD5 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.88□□□□□ -2.27
ZCCHC3Q9NUD5 SNORD14.1-201ENST00000365609 90 ntBASIC0.88□□□□□ -2.27
ZCCHC3Q9NUD5 Y_RNA.551-201ENST00000384661 102 ntBASIC0.88□□□□□ -2.27
ZCCHC3Q9NUD5 AC024067.1-201ENST00000426199 223 ntBASIC0.88□□□□□ -2.27
ZCCHC3Q9NUD5 LINC01755-201ENST00000455010 453 ntTSL 2 BASIC0.88□□□□□ -2.27
ZCCHC3Q9NUD5 PDCD5P2-201ENST00000507570 312 ntBASIC0.88□□□□□ -2.27
ZCCHC3Q9NUD5 RNU7-41P-201ENST00000515917 61 ntBASIC0.88□□□□□ -2.27
ZCCHC3Q9NUD5 RNU7-110P-201ENST00000516891 62 ntBASIC0.88□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 129.1 ms