Protein–RNA interactions for Protein: Q9H9J4

USP42, Ubiquitin carboxyl-terminal hydrolase 42, humanhuman

Known RBP Predictions only

Length 1,324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP42Q9H9J4 RNU6-625P-201ENST00000459412 107 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 SNORD123-201ENST00000459473 70 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 AC010486.3-201ENST00000511602 785 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 RNU6-864P-201ENST00000516256 108 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 RNU6-1337P-201ENST00000516525 95 ntBASIC0.22□□□□□ -2.37
USP42Q9H9J4 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.21□□□□□ -2.38
USP42Q9H9J4 MIRLET7D-201ENST00000362263 87 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 SNORD114-7-201ENST00000362520 77 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 Y_RNA.172-201ENST00000363765 102 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 RNA5SP48-201ENST00000363969 126 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 RNU6-1090P-201ENST00000364065 94 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 RNU6-879P-201ENST00000364328 108 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 Y_RNA.364-201ENST00000365532 101 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 RPS27-201ENST00000368567 350 ntAPPRIS P1 TSL 1 (best) BASIC0.21□□□□□ -2.38
USP42Q9H9J4 RNU6-1042P-201ENST00000384204 107 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 Y_RNA.473-201ENST00000384333 102 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 Y_RNA.621-201ENST00000411065 96 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 SNRPGP10-201ENST00000432323 225 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.21□□□□□ -2.38
USP42Q9H9J4 SNORD5.1-201ENST00000458800 75 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 SNORA40.9-201ENST00000515895 93 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 RNU7-43P-201ENST00000516554 64 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 AC055872.1-201ENST00000570978 278 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 MIR1321-201ENST00000637766 79 ntBASIC0.21□□□□□ -2.38
USP42Q9H9J4 SNORD115-30-201ENST00000364117 82 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 Y_RNA.253-201ENST00000364562 112 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 RNU6-831P-201ENST00000384548 107 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 MIR329-2-201ENST00000385029 84 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 MIR140-201ENST00000385282 100 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 SNORD28B-201ENST00000390993 75 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 MTND1P17-201ENST00000448961 204 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 AC131956.1-201ENST00000506420 258 ntTSL 2 BASIC0.2□□□□□ -2.38
USP42Q9H9J4 SNORD45.4-201ENST00000516629 73 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 AC105029.1-201ENST00000520250 669 ntBASIC0.2□□□□□ -2.38
USP42Q9H9J4 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.2□□□□□ -2.38
USP42Q9H9J4 MIR1-1-201ENST00000362147 71 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 SNORD50B-201ENST00000364995 70 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 SNORA2B-201ENST00000384583 137 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 RNA5SP475-201ENST00000410568 110 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 RNU7-87P-201ENST00000459343 62 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 RNU6-329P-201ENST00000459618 107 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.19□□□□□ -2.38
USP42Q9H9J4 RNU2-12P-201ENST00000517216 168 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 AC093027.1-201ENST00000546698 429 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.19□□□□□ -2.38
USP42Q9H9J4 MIR548AR-201ENST00000582191 57 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 AC018638.8-201ENST00000588755 281 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 AC245008.1-201ENST00000608123 476 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 MIR6128-201ENST00000615528 109 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 MIR4251-201ENST00000635819 61 ntBASIC0.19□□□□□ -2.38
USP42Q9H9J4 Y_RNA.274-201ENST00000364714 101 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 Y_RNA.358-201ENST00000365491 99 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 SNORD116-9-201ENST00000384000 95 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 SNORD116-3-201ENST00000384287 95 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 SNORD116-7-201ENST00000384404 95 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 SNORD116-5-201ENST00000384462 95 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 RNU6-613P-201ENST00000410412 108 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 MLLT10P1-201ENST00000418346 262 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 MTCO2P27-201ENST00000420740 428 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 MTND1P4-201ENST00000435196 415 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 SUMO1P2-201ENST00000452524 304 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 snoU13.21-201ENST00000459368 105 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 HAR1A.1-201ENST00000459583 118 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 AC108740.1-201ENST00000498629 225 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 RNU6-566P-201ENST00000516790 107 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 RNU6-1314P-201ENST00000517139 104 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 AC012433.1-201ENST00000588916 398 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 AC104695.3-201ENST00000604052 296 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 AP000770.2-201ENST00000623694 100 ntBASIC0.18□□□□□ -2.38
USP42Q9H9J4 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC0.18□□□□□ -2.38
USP42Q9H9J4 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.18□□□□□ -2.38
USP42Q9H9J4 RNU6-349P-201ENST00000362402 107 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 Y_RNA.294-201ENST00000364916 102 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 Y_RNA.301-201ENST00000364990 103 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 MIR573-201ENST00000384964 99 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 CEP57L1P1-201ENST00000430943 1201 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 NDUFA4P2-201ENST00000489989 244 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 AC026782.1-201ENST00000512952 449 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 RNU1-54P-201ENST00000517181 120 ntBASIC0.17□□□□□ -2.38
USP42Q9H9J4 MIR103A1-201ENST00000362165 78 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 RNU6-1084P-201ENST00000362498 107 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 Y_RNA.41-201ENST00000362646 102 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 Y_RNA.51-201ENST00000362725 102 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 Y_RNA.148-201ENST00000363557 117 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 Y_RNA.168-201ENST00000363740 102 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 RNU6-1327P-201ENST00000365302 105 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 MIR570-201ENST00000384917 97 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.16□□□□□ -2.38
USP42Q9H9J4 MTCO3P10-201ENST00000455912 772 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.16□□□□□ -2.38
USP42Q9H9J4 AC093534.1-201ENST00000504977 132 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 Y_RNA.688-201ENST00000516565 95 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 AL162730.1-201ENST00000605734 292 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 AC004467.1-201ENST00000615678 330 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 AC022079.1-201ENST00000621546 602 ntBASIC0.16□□□□□ -2.38
USP42Q9H9J4 NAA50-211ENST00000630058 177 ntTSL 5 BASIC0.16□□□□□ -2.38
USP42Q9H9J4 MIR18A-201ENST00000362310 71 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 SNORD45.3-201ENST00000363836 72 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 RNU6-961P-201ENST00000363893 105 ntBASIC0.15□□□□□ -2.38
USP42Q9H9J4 Y_RNA.368-201ENST00000365547 113 ntBASIC0.15□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms