Protein–RNA interactions for Protein: Q9H4Z3

PCIF1, Phosphorylated CTD-interacting factor 1, humanhuman

Predictions only

Length 704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCIF1Q9H4Z3 RNA5SP126-201ENST00000365092 109 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-1130P-201ENST00000365434 107 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 Y_RNA.506-201ENST00000384494 102 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 MIR15B-201ENST00000385045 98 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 MIR221-201ENST00000385135 110 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 RNA5SP465-201ENST00000391195 109 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 Y_RNA.587-201ENST00000391210 103 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 AL512604.1-201ENST00000404812 257 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 AL121914.1-201ENST00000450188 156 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 RPS27P1-201ENST00000450552 247 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 MIR4431-201ENST00000579990 94 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 MIR3133-201ENST00000583157 78 ntBASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.46□□□□□ -2.02
PCIF1Q9H4Z3 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-746P-201ENST00000384112 109 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 RNY3P5-201ENST00000384127 102 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-125P-201ENST00000384505 107 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 Y_RNA.622-201ENST00000411091 108 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 RNU7-94P-201ENST00000459576 63 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 RNVU1-2-201ENST00000516326 135 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 RNA5SP402-201ENST00000517148 110 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 SNORD53-201ENST00000579969 78 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 MIR2681-201ENST00000581814 105 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.45□□□□□ -2.02
PCIF1Q9H4Z3 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 SNORD45.3-201ENST00000363836 72 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-728P-201ENST00000365375 104 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 Y_RNA.357-201ENST00000365487 109 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 SNORD116-18-201ENST00000383961 92 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 RNU1-138P-201ENST00000384093 164 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 MIR562-201ENST00000384894 95 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 RNA5SP109-201ENST00000391010 116 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 RNA5SP508-201ENST00000411327 119 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 AC007064.1-201ENST00000412238 351 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 RNU7-200P-201ENST00000516105 62 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 Y_RNA.703-201ENST00000516846 111 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 AL358944.1-201ENST00000528537 144 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 JPX_2.1-201ENST00000614161 69 ntBASIC2.44□□□□□ -2.02
PCIF1Q9H4Z3 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-1019P-201ENST00000364424 107 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-643P-201ENST00000384018 107 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-187P-201ENST00000384139 106 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 Y_RNA.580-201ENST00000391004 95 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 AC245047.3-201ENST00000429428 127 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 HMGN1P7-201ENST00000491722 313 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 RNU7-193P-201ENST00000516723 65 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 AP002004.2-201ENST00000531656 154 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 AC084364.2-201ENST00000546924 395 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 MIR3945-201ENST00000581853 98 ntBASIC2.43□□□□□ -2.02
PCIF1Q9H4Z3 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-484P-201ENST00000384016 107 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 RNU4-43P-201ENST00000410628 137 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 Z98742.3-201ENST00000418637 326 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 SNRPGP8-201ENST00000454064 226 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 NDUFA4P2-201ENST00000489989 244 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 AC107027.2-201ENST00000512197 115 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 SNORD77.4-201ENST00000516158 81 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 RNU2-56P-201ENST00000516826 190 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 SNORA31.25-201ENST00000517242 134 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 MIR5194-201ENST00000582634 120 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 uc_338.4-201ENST00000616635 176 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 AL591926.4-201ENST00000616895 298 ntBASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.42□□□□□ -2.02
PCIF1Q9H4Z3 FGF7-201ENST00000267843 5467 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 RNY1P5-201ENST00000383890 115 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 SNORA48.1-201ENST00000390879 135 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-239P-201ENST00000390990 99 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 RNA5SP501-201ENST00000410990 112 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 AC006461.1-201ENST00000412637 326 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 SNRPGP10-201ENST00000432323 225 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 RNU6-346P-201ENST00000516288 111 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 AL590808.1-201ENST00000618696 141 ntBASIC2.41□□□□□ -2.02
PCIF1Q9H4Z3 SENP7-206ENST00000394094 4703 ntAPPRIS ALT2 TSL 1 (best) BASIC2.4□□□□□ -2.02
PCIF1Q9H4Z3 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.03
PCIF1Q9H4Z3 RNA5SP393-201ENST00000363423 117 ntBASIC2.4□□□□□ -2.03
PCIF1Q9H4Z3 SNORA12.1-201ENST00000390873 148 ntBASIC2.4□□□□□ -2.03
PCIF1Q9H4Z3 RNA5SP450-201ENST00000411206 102 ntBASIC2.4□□□□□ -2.03
PCIF1Q9H4Z3 AL049830.1-201ENST00000468034 425 ntBASIC2.4□□□□□ -2.03
PCIF1Q9H4Z3 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC2.4□□□□□ -2.03
PCIF1Q9H4Z3 SNORA63D-201ENST00000364359 132 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 RNU6-449P-201ENST00000383914 107 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 SNORA3.2-201ENST00000408221 125 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 RNU4-61P-201ENST00000411243 107 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 RNU7-121P-201ENST00000516604 62 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 AC091544.4-201ENST00000555268 342 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 AC009831.4-201ENST00000620744 325 ntBASIC2.39□□□□□ -2.03
PCIF1Q9H4Z3 MIR6873-201ENST00000622788 63 ntBASIC2.39□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 106.9 ms