Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 AC016925.2-201ENST00000605108 242 ntBASIC1.56□□□□□ -2.16
ZNF541Q9H0D2 AC005828.6-201ENST00000606610 232 ntBASIC1.56□□□□□ -2.16
ZNF541Q9H0D2 AC095038.3-201ENST00000634439 195 ntBASIC1.56□□□□□ -2.16
ZNF541Q9H0D2 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 AP000648.3-201ENST00000623539 4507 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 SNORD114-7-201ENST00000362520 77 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 Y_RNA.158-201ENST00000363651 101 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 SNORA33.2-201ENST00000365413 134 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 RNA5SP259-201ENST00000365541 109 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 Y_RNA.393-201ENST00000383936 102 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 RNU6-1031P-201ENST00000384773 107 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 MIR520G-201ENST00000385064 90 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 RNU4-30P-201ENST00000410245 143 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 RNA5SP511-201ENST00000410487 115 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 RN7SKP51-201ENST00000410781 304 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 RPS27P1-201ENST00000450552 247 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 RNU6-436P-201ENST00000516171 114 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 AC022616.4-201ENST00000522985 181 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 AP003072.1-201ENST00000531740 145 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 MIR4680-201ENST00000580906 66 ntBASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.55□□□□□ -2.16
ZNF541Q9H0D2 Y_RNA.527-201ENST00000384573 102 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 Y_RNA.570-201ENST00000384750 101 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 RNU6-710P-201ENST00000410424 105 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 AL161935.2-201ENST00000414627 60 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 AL049830.1-201ENST00000468034 425 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 AC079140.2-201ENST00000506193 142 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 RNA5SP61-201ENST00000516453 100 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 SNORA31.10-201ENST00000516482 106 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 RNU6-341P-201ENST00000516973 96 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 Y_RNA.715-201ENST00000517082 110 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 RNU6-1096P-201ENST00000517089 102 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 SUMO2P16-201ENST00000519475 264 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 MIR4423-201ENST00000580922 80 ntBASIC1.54□□□□□ -2.16
ZNF541Q9H0D2 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 Y_RNA.326-201ENST00000365176 113 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 Y_RNA.361-201ENST00000365515 120 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 SNORA63.7-201ENST00000365579 123 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AC117470.1-201ENST00000381974 330 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AL078595.1-201ENST00000404458 226 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AC010655.3-201ENST00000478818 450 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 SEPT14P8-201ENST00000508026 178 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 RNU6-1046P-201ENST00000516538 107 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 SNORA40.15-201ENST00000516884 107 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AP002004.2-201ENST00000531656 154 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 SNORA77B-201ENST00000578179 125 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 MIR3937-201ENST00000580135 106 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AP001485.1-201ENST00000604799 199 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 RAC1P9-201ENST00000604990 392 ntBASIC1.53□□□□□ -2.16
ZNF541Q9H0D2 AC008781.2-201ENST00000502205 2480 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 SNORD33-201ENST00000362761 85 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 MIR222-201ENST00000384992 110 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 RNU6-855P-201ENST00000410395 104 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 HSPE1P13-201ENST00000451143 297 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 AC136932.1-201ENST00000574771 208 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 MIR4422-201ENST00000581938 83 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 AC021506.2-201ENST00000612354 169 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 SNORD3E-202ENST00000627253 216 ntBASIC1.52□□□□□ -2.17
ZNF541Q9H0D2 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 Y_RNA.152-201ENST00000363578 100 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 MIR513A1-201ENST00000385138 129 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 MIR1252-201ENST00000408861 65 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 POLR2KP2-201ENST00000438155 177 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 RNU7-28P-201ENST00000516759 62 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 AC019176.1-201ENST00000518519 225 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 AC113195.1-201ENST00000579952 141 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 AC073349.3-201ENST00000617616 186 ntBASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.51□□□□□ -2.17
ZNF541Q9H0D2 SNORD81.1-201ENST00000363064 77 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 Y_RNA.105-201ENST00000363182 111 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 Y_RNA.153-201ENST00000363615 91 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 SNORD1A-201ENST00000364968 72 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 Y_RNA.341-201ENST00000365341 102 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 Y_RNA.455-201ENST00000384230 98 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 SNORD63-201ENST00000384262 68 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 RNU6-997P-201ENST00000384725 107 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 RNU1-78P-201ENST00000391248 165 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 Y_RNA.602-201ENST00000410535 92 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 AC113618.1-201ENST00000416747 285 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 PGBD4P5-201ENST00000445958 426 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 RNY3P15-201ENST00000516297 97 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 RNU6-897P-201ENST00000517135 105 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 SNORD113-5-201ENST00000607261 78 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 MIR376A1-201ENST00000616574 68 ntBASIC1.5□□□□□ -2.17
ZNF541Q9H0D2 RNU6-1123P-201ENST00000362347 106 ntBASIC1.49□□□□□ -2.17
ZNF541Q9H0D2 SNORA1B-201ENST00000362535 133 ntBASIC1.49□□□□□ -2.17
ZNF541Q9H0D2 RNU6-1011P-201ENST00000384668 107 ntBASIC1.49□□□□□ -2.17
ZNF541Q9H0D2 RNU6-985P-201ENST00000410182 104 ntBASIC1.49□□□□□ -2.17
ZNF541Q9H0D2 RNU6-121P-201ENST00000410525 99 ntBASIC1.49□□□□□ -2.17
ZNF541Q9H0D2 AL162725.1-201ENST00000435405 301 ntBASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms