Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 RNU6-911P-201ENST00000516523 104 ntBASIC1.3□□□□□ -2.2
CHMP4AQ9BY43 AC090142.3-201ENST00000519012 385 ntBASIC1.3□□□□□ -2.2
CHMP4AQ9BY43 AC024382.1-201ENST00000520224 292 ntTSL 3 BASIC1.3□□□□□ -2.2
CHMP4AQ9BY43 AC011604.1-201ENST00000545978 196 ntBASIC1.3□□□□□ -2.2
CHMP4AQ9BY43 PRELID3BP2-201ENST00000605362 201 ntBASIC1.3□□□□□ -2.2
CHMP4AQ9BY43 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.3□□□□□ -2.2
CHMP4AQ9BY43 Y_RNA.172-201ENST00000363765 102 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 RNU4-38P-201ENST00000364472 129 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 MIR942-201ENST00000401111 86 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 CHEK2P4-201ENST00000450340 246 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 Y_RNA.632-201ENST00000459189 102 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 AC091951.2-201ENST00000500762 203 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 SNORD116.3-201ENST00000517176 78 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 VN1R91P-201ENST00000594377 169 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 AL591926.4-201ENST00000616895 298 ntBASIC1.29□□□□□ -2.2
CHMP4AQ9BY43 RNU6-1199P-201ENST00000411249 104 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 MLLT10P1-201ENST00000418346 262 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 HMGN2P32-201ENST00000444648 269 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 AC114811.1-201ENST00000507207 168 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 Y_RNA.661-201ENST00000516003 99 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 RNU6-436P-201ENST00000516171 114 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 RNU6-966P-201ENST00000516479 104 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 RNU6-113P-201ENST00000516653 101 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 AC008163.1-202ENST00000636004 2889 ntBASIC1.28□□□□□ -2.2
CHMP4AQ9BY43 Y_RNA.463-201ENST00000384271 102 ntBASIC1.27□□□□□ -2.21
CHMP4AQ9BY43 MIR526A1-201ENST00000384897 85 ntBASIC1.27□□□□□ -2.21
CHMP4AQ9BY43 MIR532-201ENST00000385025 91 ntBASIC1.27□□□□□ -2.21
CHMP4AQ9BY43 RNU2-61P-201ENST00000411069 191 ntBASIC1.27□□□□□ -2.21
CHMP4AQ9BY43 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC1.27□□□□□ -2.21
CHMP4AQ9BY43 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC1.27□□□□□ -2.21
CHMP4AQ9BY43 AC136443.5-201ENST00000603741 370 ntBASIC1.27□□□□□ -2.21
CHMP4AQ9BY43 HSBP1P2-201ENST00000299671 229 ntBASIC1.26□□□□□ -2.21
CHMP4AQ9BY43 RNA5SP48-201ENST00000363969 126 ntBASIC1.26□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.230-201ENST00000364348 109 ntBASIC1.26□□□□□ -2.21
CHMP4AQ9BY43 RNU6-1175P-201ENST00000365200 107 ntBASIC1.26□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.356-201ENST00000365475 113 ntBASIC1.26□□□□□ -2.21
CHMP4AQ9BY43 SNORD124-201ENST00000459577 104 ntBASIC1.26□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.146-201ENST00000363549 102 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.187-201ENST00000363918 113 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.303-201ENST00000364998 94 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.329-201ENST00000365209 107 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.363-201ENST00000365529 113 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 RNU6-969P-201ENST00000383900 105 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 MIR608-201ENST00000384820 100 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 RNU6-875P-201ENST00000516488 106 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 RN7SKP295-201ENST00000517264 153 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 AC022441.3-201ENST00000605737 136 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 MIR4272-201ENST00000635924 64 ntBASIC1.25□□□□□ -2.21
CHMP4AQ9BY43 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.191-201ENST00000363972 113 ntBASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 MIR136-201ENST00000385207 82 ntBASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 MIR1287-201ENST00000408492 90 ntBASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 RPS3AP1-201ENST00000413190 320 ntBASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 AC005972.2-201ENST00000604690 348 ntBASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 AL008636.1-201ENST00000625038 1018 ntBASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
CHMP4AQ9BY43 RNU6-1084P-201ENST00000362498 107 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.70-201ENST00000362886 110 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 RNU1-93P-201ENST00000364704 169 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.529-201ENST00000384586 119 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 RNU6-1009P-201ENST00000390996 107 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 RNU6-855P-201ENST00000410395 104 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 RPS20P10-201ENST00000451209 253 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 SNORD19B-201ENST00000459623 84 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 SNORA25.10-201ENST00000515926 124 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 AC136628.3-201ENST00000521868 290 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 AC092447.9-201ENST00000603395 144 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 AC103810.9-201ENST00000606688 112 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 AC007742.2-201ENST00000618226 398 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 AC104985.2-201ENST00000620598 500 ntBASIC1.23□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.39-201ENST00000362620 98 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.253-201ENST00000364562 112 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 MIR516B2-201ENST00000385190 85 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 MIR1298-201ENST00000408783 112 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 MCFD2P1-201ENST00000417812 300 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 AC005042.3-201ENST00000453230 174 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 RNU6-507P-201ENST00000516045 100 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 RNA5SP255-201ENST00000516370 107 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 RNU7-43P-201ENST00000516554 64 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 AC093027.1-201ENST00000546698 429 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 C18orf54-203ENST00000578138 776 ntTSL 3 BASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 AC025627.3-201ENST00000582078 182 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 AC032019.2-201ENST00000584916 403 ntTSL 5 BASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 RBM11P1-201ENST00000604951 799 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 AL096861.1-201ENST00000610899 123 ntBASIC1.22□□□□□ -2.21
CHMP4AQ9BY43 Y_RNA.226-201ENST00000364337 114 ntBASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.570-201ENST00000384750 101 ntBASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 AC236972.2-201ENST00000434979 310 ntBASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 AC069023.1-201ENST00000442231 221 ntTSL 3 BASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 RPS26P48-201ENST00000491713 339 ntBASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 MIR4452-201ENST00000583004 71 ntBASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 RPS29P30-201ENST00000600975 111 ntBASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.772-201ENST00000606692 102 ntBASIC1.21□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.58-201ENST00000362807 102 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.154-201ENST00000363624 102 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 RNY3P1-201ENST00000365085 102 ntBASIC1.2□□□□□ -2.22
CHMP4AQ9BY43 Y_RNA.331-201ENST00000365267 102 ntBASIC1.2□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 108 ms