Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 Y_RNA.383-201ENST00000383855 97 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 AC027119.1-201ENST00000440877 241 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 RPS4XP11-201ENST00000446897 772 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 MTND4LP30-201ENST00000454092 297 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 RNU1-98P-201ENST00000458992 160 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 AL049830.1-201ENST00000468034 425 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 AL353770.2-201ENST00000620024 78 ntBASIC1.4□□□□□ -2.19
CCDC3Q9BQI4 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 SNORA72-201ENST00000384339 132 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 SNORD116-13-201ENST00000384408 92 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 MIR660-201ENST00000385235 97 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 RNU4-30P-201ENST00000410245 143 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 ELOCP20-201ENST00000422460 345 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 POLR2KP2-201ENST00000438155 177 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 SNRPGP13-201ENST00000442212 177 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 HSPE1P25-201ENST00000455484 251 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 AC010655.3-201ENST00000478818 450 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 RNA5SP445-201ENST00000515889 115 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 RNU6-1153P-201ENST00000516760 105 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 SNORA40.15-201ENST00000516884 107 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 RNU6-1137P-201ENST00000517073 99 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 AC136628.3-201ENST00000521868 290 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 AC131281.1-201ENST00000522984 164 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 MIR4719-201ENST00000585233 84 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 MIR4762-201ENST00000585261 75 ntBASIC1.39□□□□□ -2.19
CCDC3Q9BQI4 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.153-201ENST00000363615 91 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.172-201ENST00000363765 102 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 U8.5-201ENST00000364528 136 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.265-201ENST00000364677 108 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.267-201ENST00000364679 109 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.269-201ENST00000364685 89 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.341-201ENST00000365341 102 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 RNU6-424P-201ENST00000384367 105 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.527-201ENST00000384573 102 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 RNU6-1011P-201ENST00000384668 107 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 RNU6-121P-201ENST00000410525 99 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 AL731563.1-201ENST00000442202 214 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 LINC01399-202ENST00000458450 244 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 RNU6-902P-201ENST00000517212 91 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 DEFB117-201ENST00000602356 141 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.812-201ENST00000610788 101 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.784-201ENST00000613803 101 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 AL078604.3-201ENST00000615580 211 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.787-201ENST00000616522 101 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.780-201ENST00000617336 101 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.801-201ENST00000619005 101 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 FAS-AS1.2-201ENST00000620386 170 ntBASIC1.38□□□□□ -2.19
CCDC3Q9BQI4 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.286-201ENST00000364813 102 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 MIR513A1-201ENST00000385138 129 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 RNU6-855P-201ENST00000410395 104 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 Z98949.2-201ENST00000440996 144 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 STAG3L5P-204ENST00000443759 179 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 HSPE1P24-201ENST00000450782 238 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 AC079140.2-201ENST00000506193 142 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 RNU6-397P-201ENST00000516226 104 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 RNU6-1291P-201ENST00000516591 104 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 AC011604.1-201ENST00000545978 196 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 AC006504.6-201ENST00000590142 199 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 AP003357.1-201ENST00000604497 148 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 AC027279.3-201ENST00000625055 122 ntBASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.37□□□□□ -2.19
CCDC3Q9BQI4 MIRLET7C-201ENST00000362160 84 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.19-201ENST00000362462 99 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 U8.1-201ENST00000362843 134 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.105-201ENST00000363182 111 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 SNORA63-201ENST00000363450 132 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 RNU6-326P-201ENST00000365480 107 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 RNU6-1105P-201ENST00000384774 107 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 MIR320A-201ENST00000385302 82 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 RN7SKP51-201ENST00000410781 304 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 RNA5SP168-201ENST00000516642 112 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 AP003072.1-201ENST00000531740 145 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 MIR7111-201ENST00000619751 72 ntBASIC1.36□□□□□ -2.19
CCDC3Q9BQI4 RNU6-694P-201ENST00000364071 147 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.210-201ENST00000364161 110 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 RNU4-41P-201ENST00000364426 143 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 RNU6-290P-201ENST00000365212 101 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.418-201ENST00000384029 102 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.508-201ENST00000384502 114 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 RNU6-1160P-201ENST00000384546 104 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 RNU6-136P-201ENST00000384663 107 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 Y_RNA.569-201ENST00000384749 103 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 MIR653-201ENST00000385279 96 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 MIR1276-201ENST00000408707 83 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 HMGN1P7-201ENST00000491722 313 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 RNU6-191P-201ENST00000516295 94 ntBASIC1.35□□□□□ -2.19
CCDC3Q9BQI4 RNU7-115P-201ENST00000516433 55 ntBASIC1.35□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 187.8 ms