Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 Y_RNA.452-201ENST00000384202 108 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 Y_RNA.477-201ENST00000384352 108 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 RNU6-376P-201ENST00000384731 106 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 MIR764-201ENST00000390811 85 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.52□□□□□ -2.17
USP28Q96RU2 HSPE1P9-201ENST00000440046 311 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 RPS4XP11-201ENST00000446897 772 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 HSPE1P13-201ENST00000451143 297 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 SUMO1P2-201ENST00000452524 304 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 SNORD127-201ENST00000458892 86 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 SNORA70.12-201ENST00000516084 153 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 RNU6-1291P-201ENST00000516591 104 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 MIR4643-201ENST00000577473 78 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 AC091178.2-201ENST00000584401 117 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 U4.1-201ENST00000620349 87 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 PLD1-217ENST00000627725 174 ntTSL 5 BASIC1.52□□□□□ -2.17
USP28Q96RU2 AC134026.1-201ENST00000623249 2239 ntBASIC1.52□□□□□ -2.17
USP28Q96RU2 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
USP28Q96RU2 Y_RNA.14-201ENST00000362415 103 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 SNORA63D-201ENST00000364359 132 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 Y_RNA.368-201ENST00000365547 113 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 RNU6-203P-201ENST00000384038 104 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 RNU6-763P-201ENST00000390865 106 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 SNORA12.1-201ENST00000390873 148 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 SNORA53-201ENST00000391141 249 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 MIR1302-3-201ENST00000408128 138 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 AC010154.1-201ENST00000425857 269 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 AL162725.1-201ENST00000435405 301 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 RNU1-123P-201ENST00000458950 160 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 U8.19-201ENST00000459095 133 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.51□□□□□ -2.17
USP28Q96RU2 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.51□□□□□ -2.17
USP28Q96RU2 SNORA31.10-201ENST00000516482 106 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 RNU6-548P-201ENST00000517083 115 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 MIR6079-201ENST00000635807 62 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 AC068647.2-201ENST00000637380 353 ntBASIC1.51□□□□□ -2.17
USP28Q96RU2 AC018630.2-201ENST00000534866 2403 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 Y_RNA.288-201ENST00000364854 92 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 Y_RNA.307-201ENST00000365022 117 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 AL603910.2-201ENST00000407268 136 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 snoU13.9-201ENST00000458927 103 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 RNU6-1132P-201ENST00000459214 107 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 Y_RNA.637-201ENST00000459424 114 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 AC004223.1-201ENST00000479840 271 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 RNU6-1278P-201ENST00000516130 107 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 AC024995.1-201ENST00000523014 93 ntBASIC1.5□□□□□ -2.17
USP28Q96RU2 AC040936.1-201ENST00000534543 172 ntTSL 5 BASIC1.5□□□□□ -2.17
USP28Q96RU2 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.5□□□□□ -2.17
USP28Q96RU2 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC1.5□□□□□ -2.17
USP28Q96RU2 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC1.49□□□□□ -2.17
USP28Q96RU2 MIR335-201ENST00000362173 94 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 Y_RNA.217-201ENST00000364214 105 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 Y_RNA.267-201ENST00000364679 109 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 RNU6-740P-201ENST00000364734 105 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 RNU6-702P-201ENST00000364982 107 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 SNORA72.4-201ENST00000384174 132 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 MIR515-2-201ENST00000384883 83 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 MIR515-1-201ENST00000384884 83 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 RNU6-710P-201ENST00000410424 105 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 RNU2-7P-201ENST00000410794 178 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 AC245047.3-201ENST00000429428 127 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 AC104332.1-201ENST00000440471 797 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 Y_RNA.641-201ENST00000459414 105 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 AC117454.1-201ENST00000491120 168 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 Y_RNA.673-201ENST00000516306 88 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 RNU6-1096P-201ENST00000517089 102 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 AP001485.1-201ENST00000604799 199 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 AC062037.2-201ENST00000610137 73 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 AL008718.3-201ENST00000610217 321 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 U2.14-201ENST00000615943 113 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
USP28Q96RU2 AL161722.3-201ENST00000605789 2983 ntBASIC1.49□□□□□ -2.17
USP28Q96RU2 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.48□□□□□ -2.17
USP28Q96RU2 Y_RNA.275-201ENST00000364726 110 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 Y_RNA.277-201ENST00000364754 102 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 U8.7-201ENST00000364940 136 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 RNU6-1080P-201ENST00000383982 107 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 RNU6-514P-201ENST00000384208 107 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 Y_RNA.456-201ENST00000384232 111 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 Y_RNA.562-201ENST00000384695 113 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 MIR520A-201ENST00000384862 85 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 BTF3P11-201ENST00000426582 477 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 AL591806.2-201ENST00000433122 173 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 RNU7-141P-201ENST00000459304 62 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 AC005908.1-201ENST00000468701 347 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 SNORA27.4-201ENST00000516650 95 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 AC136628.3-201ENST00000521868 290 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 MIR3128-201ENST00000581957 66 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 AL512605.2-201ENST00000592972 256 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 AL929325.1-201ENST00000603096 117 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 snoU18.1-201ENST00000629629 71 ntBASIC1.48□□□□□ -2.17
USP28Q96RU2 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC1.47□□□□□ -2.17
USP28Q96RU2 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USP28Q96RU2 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
USP28Q96RU2 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
USP28Q96RU2 UBE2WP1-201ENST00000362030 340 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 SNORA1B-201ENST00000362535 133 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 Y_RNA.44-201ENST00000362676 108 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 Y_RNA.54-201ENST00000362766 105 ntBASIC1.47□□□□□ -2.17
USP28Q96RU2 RNU6-1272P-201ENST00000362776 107 ntBASIC1.47□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 129 ms