Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AP003174.1-201ENST00000306533 376 ntTSL 2 BASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 RNU6-244P-201ENST00000391028 104 ntBASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 ZNF736P8Y-201ENST00000451913 669 ntBASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 Y_RNA.637-201ENST00000459424 114 ntBASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 U6.108-201ENST00000637764 58 ntBASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 MTND1P26-201ENST00000440488 538 ntBASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 AL353572.1-201ENST00000442490 417 ntBASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 LINC02294-201ENST00000549330 497 ntTSL 2 BASIC-2.56□□□□□ -2.82
VPS13AQ96RL7 RNU6-125P-201ENST00000384505 107 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 RNU6-258P-201ENST00000390884 101 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 MIR4308-201ENST00000580634 81 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 AL354696.1-201ENST00000614652 497 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 Y_RNA.519-201ENST00000384553 102 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 SNORA49-201ENST00000386157 136 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 RPL39P25-201ENST00000449384 154 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 AL022154.1-201ENST00000604698 785 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 AL391834.2-201ENST00000609982 546 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 Y_RNA.449-201ENST00000384187 102 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 RNU6-154P-201ENST00000384306 106 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 SNORA75.4-201ENST00000391278 119 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 RNU6-1146P-201ENST00000516282 102 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 MIR4490-201ENST00000582647 84 ntBASIC-2.57□□□□□ -2.82
VPS13AQ96RL7 AL353742.1-201ENST00000453455 224 ntTSL 3 BASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 AC005178.1-201ENST00000508392 440 ntBASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 RNU6-765P-201ENST00000516916 99 ntBASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 SNORD93-201ENST00000408813 74 ntBASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 RNU6-1190P-201ENST00000410811 104 ntBASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 AC244090.1-201ENST00000441884 93 ntBASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 LINC00301-204ENST00000532591 470 ntTSL 2 BASIC-2.58□□□□□ -2.82
VPS13AQ96RL7 AC007283.2-201ENST00000424739 197 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 ELOCP14-201ENST00000428070 331 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 MTATP6P13-201ENST00000438531 667 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 ELOCP7-201ENST00000439968 331 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 MRPS36P5-201ENST00000551909 298 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 AL133255.1-201ENST00000606374 441 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 uc_338.4-201ENST00000616635 176 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 RNU6-1025P-201ENST00000410629 104 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 AL391863.2-201ENST00000411838 681 ntTSL 2 BASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 AC092839.2-201ENST00000431130 377 ntTSL 3 BASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 AL355375.2-201ENST00000574825 175 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 AC027279.3-201ENST00000625055 122 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 RNU6-1175P-201ENST00000365200 107 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 RPS3AP3-201ENST00000411933 242 ntBASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 AC016903.2-201ENST00000456384 326 ntTSL 3 BASIC-2.59□□□□□ -2.82
VPS13AQ96RL7 MIR516B2-201ENST00000385190 85 ntBASIC-2.6□□□□□ -2.83
VPS13AQ96RL7 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC-2.6□□□□□ -2.83
VPS13AQ96RL7 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC-2.6□□□□□ -2.83
VPS13AQ96RL7 MIR6082-201ENST00000613604 109 ntBASIC-2.6□□□□□ -2.83
VPS13AQ96RL7 Y_RNA.134-201ENST00000363435 105 ntBASIC-2.6□□□□□ -2.83
VPS13AQ96RL7 RNU6-1226P-201ENST00000384317 107 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 SNORD38B-201ENST00000384690 67 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 IL6ST-207ENST00000396816 168 ntTSL 1 (best) BASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 Y_RNA.622-201ENST00000411091 108 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 AC090616.4-201ENST00000448026 115 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 SNORD2-201ENST00000459163 69 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 AC110760.3-201ENST00000598794 467 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 RNU6-1264P-201ENST00000383891 107 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 Y_RNA.785-201ENST00000384290 109 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 AC090617.8-201ENST00000623339 167 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 AC005002.2-201ENST00000438228 269 ntBASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 AP003386.1-201ENST00000526509 504 ntTSL 3 BASIC-2.61□□□□□ -2.83
VPS13AQ96RL7 RNU6-208P-201ENST00000362431 107 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 Y_RNA.569-201ENST00000384749 103 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 RNU7-74P-201ENST00000459104 62 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 AL512347.1-201ENST00000566420 503 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 MTND5P34-201ENST00000568888 325 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 MIR548Y-201ENST00000582739 110 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 SNORD82-201ENST00000365530 70 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 MIR15B-201ENST00000385045 98 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 TRAJ33-201ENST00000390504 57 ntAPPRIS P1 BASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 RNU5F-4P-201ENST00000516581 114 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 RNU6-107P-201ENST00000516643 102 ntBASIC-2.62□□□□□ -2.83
VPS13AQ96RL7 SNORD115-16-201ENST00000363887 82 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 RNU6-740P-201ENST00000364734 105 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 RNU6-519P-201ENST00000410590 108 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 RNU6-948P-201ENST00000516374 107 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 AL355598.1-201ENST00000604169 202 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 RNU6-622P-201ENST00000384272 103 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 RNU6-417P-201ENST00000384712 107 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 DEFB131B-201ENST00000530210 213 ntAPPRIS P1 TSL 1 (best) BASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 EIF1AXP2-201ENST00000555940 413 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 AL353691.2-201ENST00000443795 59 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 MIR4782-201ENST00000577987 79 ntBASIC-2.63□□□□□ -2.83
VPS13AQ96RL7 RNU6-943P-201ENST00000516960 98 ntBASIC-2.64□□□□□ -2.83
VPS13AQ96RL7 MIRLET7A3-201ENST00000362116 74 ntBASIC-2.64□□□□□ -2.83
VPS13AQ96RL7 RNU6-1309P-201ENST00000363305 108 ntBASIC-2.64□□□□□ -2.83
VPS13AQ96RL7 RNU5E-6P-201ENST00000365574 115 ntBASIC-2.64□□□□□ -2.83
VPS13AQ96RL7 AL512637.2-201ENST00000431287 1256 ntBASIC-2.64□□□□□ -2.83
VPS13AQ96RL7 RNY4P25-201ENST00000459254 96 ntBASIC-2.64□□□□□ -2.83
VPS13AQ96RL7 AC004067.1-201ENST00000608733 700 ntBASIC-2.64□□□□□ -2.83
VPS13AQ96RL7 RNU6-190P-201ENST00000384154 102 ntBASIC-2.65□□□□□ -2.83
VPS13AQ96RL7 AL358934.1-201ENST00000432346 324 ntBASIC-2.65□□□□□ -2.83
VPS13AQ96RL7 RNU6-1333P-201ENST00000516162 93 ntBASIC-2.65□□□□□ -2.83
VPS13AQ96RL7 RNU6-1098P-201ENST00000516772 96 ntBASIC-2.65□□□□□ -2.83
Retrieved 100 of 98,524 protein–RNA pairs in 107 ms