| HOOK2 | Q96ED9 | RNU1-97P-201 | ENST00000516872 | 164 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HOOK2 | Q96ED9 | SNORA44.1-201 | ENST00000517031 | 108 nt | BASIC | 2.22 | □□□□□ -2.05 | | |
| HOOK2 | Q96ED9 | NAA50-211 | ENST00000630058 | 177 nt | TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| HOOK2 | Q96ED9 | ZGRF1-203 | ENST00000445203 | 6529 nt | APPRIS P1 TSL 5 BASIC | 2.22 | □□□□□ -2.05 | | |
| HOOK2 | Q96ED9 | PTPRQ-208 | ENST00000614701 | 8289 nt | APPRIS P1 TSL 5 BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.144-201 | ENST00000363521 | 113 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AL034345.1-201 | ENST00000407768 | 123 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNA5SP247-201 | ENST00000411181 | 105 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AL135790.2-201 | ENST00000437701 | 267 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC233266.1-201 | ENST00000454518 | 96 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-1291P-201 | ENST00000516591 | 104 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC011604.1-201 | ENST00000545978 | 196 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | POLR3GP1-201 | ENST00000594073 | 261 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AP003357.1-201 | ENST00000604497 | 148 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC242852.1-201 | ENST00000612151 | 96 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR548AY-201 | ENST00000617669 | 107 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC244015.1-201 | ENST00000622301 | 99 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC084768.2-201 | ENST00000622736 | 221 nt | BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | PI15-201 | ENST00000260113 | 6732 nt | APPRIS P1 TSL 1 (best) BASIC | 2.21 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.44-201 | ENST00000362676 | 108 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-899P-201 | ENST00000363947 | 107 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-801P-201 | ENST00000364087 | 105 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.452-201 | ENST00000384202 | 108 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SNORA67.5-201 | ENST00000391036 | 107 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | ATP6V0E1P3-201 | ENST00000420036 | 246 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC104332.1-201 | ENST00000440471 | 797 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU7-34P-201 | ENST00000459394 | 64 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU7-115P-201 | ENST00000516433 | 55 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | snoU13.31-201 | ENST00000607291 | 104 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | U2.14-201 | ENST00000615943 | 113 nt | BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | BRCA1-202 | ENST00000354071 | 4497 nt | TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SI-201 | ENST00000264382 | 6011 nt | APPRIS P1 TSL 1 (best) BASIC | 2.2 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC008163.1-205 | ENST00000413944 | 4649 nt | TSL 1 (best) BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR378A-201 | ENST00000362177 | 66 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SNORA1B-201 | ENST00000362535 | 133 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.265-201 | ENST00000364677 | 108 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-702P-201 | ENST00000364982 | 107 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SNORA4.2-201 | ENST00000365313 | 147 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNA5SP482-201 | ENST00000391269 | 118 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | HMGN2P19-201 | ENST00000425149 | 265 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AL049830.1-201 | ENST00000468034 | 425 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.668-201 | ENST00000516233 | 93 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR4255-201 | ENST00000579351 | 72 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AL929325.1-201 | ENST00000603096 | 117 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | WWP1P1-201 | ENST00000466609 | 2769 nt | BASIC | 2.19 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-1272P-201 | ENST00000362776 | 107 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.193-201 | ENST00000363979 | 102 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.217-201 | ENST00000364214 | 105 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.275-201 | ENST00000364726 | 110 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.352-201 | ENST00000365439 | 102 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-1031P-201 | ENST00000384773 | 107 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR548H3-201 | ENST00000408771 | 118 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.621-201 | ENST00000411065 | 96 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SNORD127-201 | ENST00000458892 | 86 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.641-201 | ENST00000459414 | 105 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SNORA31.10-201 | ENST00000516482 | 106 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-250P-201 | ENST00000516958 | 103 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC024405.2-202 | ENST00000532731 | 184 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC127455.1-201 | ENST00000565496 | 145 nt | BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | PYGO1-201 | ENST00000302000 | 8488 nt | TSL 1 (best) BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | XIRP2-201 | ENST00000295237 | 5246 nt | TSL 2 BASIC | 2.18 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | Y_RNA.164-201 | ENST00000363709 | 102 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-763P-201 | ENST00000390865 | 106 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AL627390.1-201 | ENST00000396055 | 340 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AL136985.1-201 | ENST00000424592 | 395 nt | TSL 3 BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | JTBP1-201 | ENST00000441314 | 247 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU7-141P-201 | ENST00000459304 | 62 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC117454.1-201 | ENST00000491120 | 168 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC004817.2-201 | ENST00000561794 | 651 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR4503-201 | ENST00000582187 | 83 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR3149-201 | ENST00000584629 | 83 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC103810.8-201 | ENST00000607347 | 118 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC135050.6-201 | ENST00000610813 | 528 nt | TSL 3 BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR8074-201 | ENST00000615081 | 81 nt | BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | CGGBP1-202 | ENST00000398392 | 5298 nt | APPRIS P1 BASIC | 2.17 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | U8.7-201 | ENST00000364940 | 136 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-144P-201 | ENST00000383951 | 107 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RNU6-662P-201 | ENST00000384253 | 104 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR9-3-201 | ENST00000385084 | 90 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SNORA26.5-201 | ENST00000391215 | 123 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SUMO2P12-201 | ENST00000405924 | 140 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | STAG3L5P-204 | ENST00000443759 | 179 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | SNORD13-201 | ENST00000459299 | 104 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RPL39P38-201 | ENST00000467018 | 153 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RN7SL274P-201 | ENST00000492268 | 272 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | RPL23AP54-201 | ENST00000495129 | 419 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | AC012493.3-201 | ENST00000604494 | 112 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR502-201 | ENST00000606349 | 86 nt | BASIC | 2.16 | □□□□□ -2.06 | | |
| HOOK2 | Q96ED9 | MIR30A-201 | ENST00000385092 | 71 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | TRAJ39-201 | ENST00000390498 | 63 nt | APPRIS P1 BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | MIR676-201 | ENST00000390702 | 67 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | MTCO2P33-201 | ENST00000402100 | 465 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | MIR1267-201 | ENST00000408723 | 78 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | RPL30P13-201 | ENST00000418873 | 348 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | RNU6-1132P-201 | ENST00000459214 | 107 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | MIR3198-2-201 | ENST00000577868 | 80 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | AC062037.2-201 | ENST00000610137 | 73 nt | BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | LRRD1-203 | ENST00000430130 | 2661 nt | APPRIS P1 TSL 5 BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | FSD1L-201 | ENST00000374707 | 7062 nt | TSL 1 (best) BASIC | 2.15 | □□□□□ -2.07 | | |
| HOOK2 | Q96ED9 | CHST9-202 | ENST00000581714 | 2043 nt | APPRIS P1 TSL 1 (best) BASIC | 2.14 | □□□□□ -2.07 | | |