Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 MIR522-201ENST00000385071 87 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 SNORA17.3-201ENST00000391159 129 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 AC022028.1-201ENST00000412054 408 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 AC093850.1-201ENST00000454121 251 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 HMGN1P10-201ENST00000474557 553 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 AC108210.2-201ENST00000503681 201 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 RNU6-1170P-201ENST00000515974 106 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 RNA5SP404-201ENST00000517118 132 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 AL008636.1-201ENST00000625038 1018 ntBASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.87□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.80-201ENST00000362996 102 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 SNORA63.7-201ENST00000365579 123 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 RNU6-969P-201ENST00000383900 105 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.509-201ENST00000384506 99 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 MIR764-201ENST00000390811 85 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 AC024067.1-201ENST00000426199 223 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 RNU7-95P-201ENST00000459222 64 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.661-201ENST00000516003 99 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 AP003357.1-201ENST00000604497 148 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 AC011373.1-201ENST00000607270 237 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.804-201ENST00000615262 101 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 AL157834.3-201ENST00000615543 103 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 AL353770.2-201ENST00000620024 78 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 AL391516.1-201ENST00000554380 2449 ntBASIC0.86□□□□□ -2.27
RPUSD4Q96CM3 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.331-201ENST00000365267 102 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 RPL39P28-201ENST00000465655 155 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 AC108752.1-201ENST00000484679 576 ntTSL 5 BASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 HMGN1P7-201ENST00000491722 313 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 AC114811.1-201ENST00000507207 168 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 SNORA31.2-201ENST00000516019 134 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 AC040926.1-201ENST00000530195 238 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 AC087685.1-201ENST00000587507 141 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 BX284668.6-201ENST00000606899 438 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 AL353997.5-201ENST00000618886 171 ntBASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 ZGRF1-202ENST00000309071 3347 ntTSL 1 (best) BASIC0.85□□□□□ -2.27
RPUSD4Q96CM3 SNORD68-201ENST00000363214 84 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.222-201ENST00000364264 102 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 Y_RNA.341-201ENST00000365341 102 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 SNORD14.1-201ENST00000365609 90 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 RNU6-163P-201ENST00000384396 106 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 MIR15B-201ENST00000385045 98 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 RNU6-855P-201ENST00000410395 104 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 RNU6-130P-201ENST00000411112 103 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 MTND4LP11-201ENST00000422184 280 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 HMGN2P32-201ENST00000444648 269 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 MTND4P19-201ENST00000446659 478 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 RPL39P39-201ENST00000455840 151 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 snoU13.23-201ENST00000458863 104 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 AC122707.1-201ENST00000502882 219 ntTSL 2 BASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 RNU7-40P-201ENST00000516397 64 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 SNORA70.22-201ENST00000517160 124 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 RNU6-1116P-201ENST00000517269 99 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 C8orf59P2-201ENST00000603441 271 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 PRELID3BP2-201ENST00000605362 201 ntBASIC0.84□□□□□ -2.27
RPUSD4Q96CM3 EYS-205ENST00000393380 5450 ntTSL 1 (best) BASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.471-201ENST00000384312 102 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 5S_rRNA.2-201ENST00000391293 112 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 SNORA11.2-201ENST00000408318 127 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 MIR1298-201ENST00000408783 112 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 AC104332.1-201ENST00000440471 797 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 LINC01399-202ENST00000458450 244 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 AC048334.1-201ENST00000477975 159 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 SNORD79.1-201ENST00000516069 84 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 AC015712.3-201ENST00000559380 164 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 AC127455.1-201ENST00000565496 145 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 DEFB117-201ENST00000602356 141 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 SNORD113-5-201ENST00000607261 78 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 AC006157.1-201ENST00000611750 366 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 PART1_1.1-201ENST00000611761 217 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 AL391903.3-201ENST00000612158 163 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 AC090971.5-201ENST00000621102 293 ntBASIC0.83□□□□□ -2.28
RPUSD4Q96CM3 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.363-201ENST00000365529 113 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.485-201ENST00000384395 102 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 RNU6-1248P-201ENST00000391096 64 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.621-201ENST00000411065 96 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 AC108667.1-201ENST00000428618 249 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 SEPT14P8-201ENST00000508026 178 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 RNU7-115P-201ENST00000516433 55 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 RNU7-110P-201ENST00000516891 62 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.714-201ENST00000517065 90 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 AP003716.2-201ENST00000528260 108 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 FAM106DP-201ENST00000586416 501 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 MIR6078-201ENST00000611069 100 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 AC007485.1-201ENST00000616755 206 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 AC007742.2-201ENST00000618226 398 ntBASIC0.82□□□□□ -2.28
RPUSD4Q96CM3 Y_RNA.136-201ENST00000363444 102 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 RNU6-674P-201ENST00000363831 107 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 snoU2-30.1-201ENST00000365012 70 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 RNU6-937P-201ENST00000384325 106 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 SNORA80D-201ENST00000384488 135 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 RNU6-910P-201ENST00000390844 107 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 PMCHL1-202ENST00000423102 261 ntBASIC0.81□□□□□ -2.28
RPUSD4Q96CM3 PIGPP3-201ENST00000425307 415 ntBASIC0.81□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 251.2 ms