Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AL139396.1-201ENST00000421137 167 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 LINC02238-202ENST00000436262 320 ntTSL 3 BASIC0.35□□□□□ -2.35
LMX1AQ8TE12 RNU7-43P-201ENST00000516554 64 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 RNU6-273P-201ENST00000516937 96 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 MIR4764-201ENST00000580680 88 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 AC048344.4-201ENST00000619744 527 ntBASIC0.35□□□□□ -2.35
LMX1AQ8TE12 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.35□□□□□ -2.35
LMX1AQ8TE12 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.35□□□□□ -2.35
LMX1AQ8TE12 SNORD68-201ENST00000363214 84 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 RNU4-75P-201ENST00000364621 146 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.330-201ENST00000365230 109 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.339-201ENST00000365325 102 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.34□□□□□ -2.36
LMX1AQ8TE12 SNORD111-201ENST00000408139 94 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 RNU6-1050P-201ENST00000410388 107 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 AC244098.3-201ENST00000424803 96 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC0.34□□□□□ -2.36
LMX1AQ8TE12 MTND2P22-201ENST00000444325 1033 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 Z83846.1-201ENST00000446798 265 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.34□□□□□ -2.36
LMX1AQ8TE12 RNU4-49P-201ENST00000516080 140 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 RNU6-1016P-201ENST00000516689 94 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 MIR2355-201ENST00000517199 87 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 AC023827.1-201ENST00000569247 97 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 AP005530.1-201ENST00000572608 567 ntTSL 3 BASIC0.34□□□□□ -2.36
LMX1AQ8TE12 EIF1P4-201ENST00000572664 335 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 MIR4790-201ENST00000577799 79 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 Z83818.1-201ENST00000603584 150 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 AC015540.1-201ENST00000615828 501 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 AC100810.6-201ENST00000638068 285 ntBASIC0.34□□□□□ -2.36
LMX1AQ8TE12 SNORA25.3-201ENST00000363205 127 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.295-201ENST00000364918 102 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.473-201ENST00000384333 102 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 RNU6-1067P-201ENST00000384752 107 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 MIR15B-201ENST00000385045 98 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 RNU2-61P-201ENST00000411069 191 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.33□□□□□ -2.36
LMX1AQ8TE12 AC011352.1-201ENST00000512300 793 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.682-201ENST00000516457 100 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 AF235103.2-201ENST00000525753 346 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC0.33□□□□□ -2.36
LMX1AQ8TE12 AC018638.8-201ENST00000588755 281 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 AC060780.3-201ENST00000589464 80 ntBASIC0.33□□□□□ -2.36
LMX1AQ8TE12 RNA5SP257-201ENST00000363023 116 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 RNU6-961P-201ENST00000363893 105 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 RNA5SP48-201ENST00000363969 126 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.253-201ENST00000364562 112 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 RNU6-1297P-201ENST00000384415 104 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 MIR516B2-201ENST00000385190 85 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 RNU1-119P-201ENST00000391122 165 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 SNORD12B-201ENST00000410433 91 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 MRPS18CP6-201ENST00000423587 223 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 RNU7-87P-201ENST00000459343 62 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 AC116353.2-201ENST00000505332 712 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 SNORD45.4-201ENST00000516629 73 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 AC022616.4-201ENST00000522985 181 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.32□□□□□ -2.36
LMX1AQ8TE12 AC055872.1-201ENST00000570978 278 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 MIR4514-201ENST00000581410 57 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 AC004467.1-201ENST00000615678 330 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 AC240442.1-201ENST00000616055 283 ntBASIC0.32□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.2-201ENST00000362330 96 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.172-201ENST00000363765 102 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 SNORD113.3-201ENST00000364630 78 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 SNORD14.1-201ENST00000365609 90 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 RNU6-945P-201ENST00000383947 107 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.573-201ENST00000384763 105 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 MIR1827-201ENST00000408549 66 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 RNU6-1199P-201ENST00000411249 104 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 MTCO2P12-201ENST00000427426 682 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 MTND1P4-201ENST00000435196 415 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 SNORD123-201ENST00000459473 70 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 AC105313.1-201ENST00000509121 353 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 RN7SKP12-201ENST00000516275 143 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 RNU6-1012P-201ENST00000516606 109 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 AC023932.2-201ENST00000603176 175 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 U4.5-201ENST00000617137 123 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.31□□□□□ -2.36
LMX1AQ8TE12 MIR6516-201ENST00000630554 81 ntBASIC0.31□□□□□ -2.36
LMX1AQ8TE12 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.3□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.101-201ENST00000363154 102 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 SNORD50B-201ENST00000364995 70 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.404-201ENST00000383978 102 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.482-201ENST00000384377 111 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RNU6-510P-201ENST00000391239 108 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AL031003.1-201ENST00000404229 172 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RNU2-54P-201ENST00000410299 190 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RNU6-1304P-201ENST00000411374 106 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AC244023.1-201ENST00000426884 112 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 U8.19-201ENST00000459095 133 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RPL17P19-201ENST00000489069 552 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RNU6-408P-201ENST00000515910 100 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RNU6-720P-201ENST00000516363 108 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 SNORA18.7-201ENST00000516910 131 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 Y_RNA.708-201ENST00000516950 96 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AC005899.2-201ENST00000584353 90 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 AC242498.1-201ENST00000604134 111 ntBASIC0.3□□□□□ -2.36
LMX1AQ8TE12 RBM11P1-201ENST00000604951 799 ntBASIC0.3□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 135.2 ms