Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 AC068647.2-201ENST00000637380 353 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 AC099654.10-201ENST00000640395 161 ntBASIC1.51□□□□□ -2.17
PDLIM3Q53GG5 SNORA16.1-201ENST00000364597 132 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.265-201ENST00000364677 108 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.341-201ENST00000365341 102 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.569-201ENST00000384749 103 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 SUMO1P2-201ENST00000452524 304 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 HSPE1P25-201ENST00000455484 251 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 RPS26P45-201ENST00000471748 340 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 RNU6-496P-201ENST00000516145 99 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 RNA5SP481-201ENST00000516814 122 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 MIR4303-201ENST00000581299 66 ntBASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC1.5□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.16-201ENST00000362421 102 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 snoU2_19.2-201ENST00000363024 80 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.162-201ENST00000363683 102 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 RNU6-1048P-201ENST00000364054 107 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 RNU6-117P-201ENST00000365415 107 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 RNU6-1080P-201ENST00000383982 107 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 RNU6-203P-201ENST00000384038 104 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 RNU6-713P-201ENST00000384761 107 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 AL627390.1-201ENST00000396055 340 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 MIR1267-201ENST00000408723 78 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 MTND2P23-201ENST00000422990 651 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 AC024067.1-201ENST00000426199 223 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 RNU6-327P-201ENST00000516270 127 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 AC015720.1-201ENST00000565251 277 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 MIR3618-201ENST00000580330 88 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 MIR4422-201ENST00000581938 83 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 MIR8063-201ENST00000621930 81 ntBASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 CEP290-201ENST00000309041 7616 ntAPPRIS ALT1 TSL 5 BASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.49□□□□□ -2.17
PDLIM3Q53GG5 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 SNORA1B-201ENST00000362535 133 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 RNU4-90P-201ENST00000362773 141 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 SNORD48-201ENST00000364953 64 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.541-201ENST00000384640 113 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 RN7SKP200-201ENST00000410564 320 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 AL118496.2-201ENST00000448300 230 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 RPS20P10-201ENST00000451209 253 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 RNU7-94P-201ENST00000459576 63 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 AC097501.2-201ENST00000502668 305 ntTSL 5 BASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 RNA5SP102-201ENST00000516865 106 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 AC004832.4-201ENST00000608952 331 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 AC134026.1-201ENST00000623249 2239 ntBASIC1.48□□□□□ -2.17
PDLIM3Q53GG5 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.145-201ENST00000363527 102 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 Y_RNA.418-201ENST00000384029 102 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 RNU6-1109P-201ENST00000391187 107 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 ZNF468-202ENST00000396409 384 ntTSL 5 BASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 RNU6-710P-201ENST00000410424 105 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 MLLT10P1-201ENST00000418346 262 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 AC009474.2-201ENST00000451383 136 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 snoU13.9-201ENST00000458927 103 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 RNU1-123P-201ENST00000458950 160 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 AC117454.1-201ENST00000491120 168 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 HMGN1P7-201ENST00000491722 313 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 AC084768.2-201ENST00000622736 221 ntBASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC1.47□□□□□ -2.17
PDLIM3Q53GG5 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 RNU6-1309P-201ENST00000363305 108 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 SNORD114-22-201ENST00000365423 72 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.361-201ENST00000365515 120 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 RNU6-738P-201ENST00000384531 106 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 MIR598-201ENST00000384868 97 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 RNU6-360P-201ENST00000390944 104 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.581-201ENST00000391017 97 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AL162725.1-201ENST00000435405 301 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AL135790.2-201ENST00000437701 267 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AC003989.2-201ENST00000440224 169 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AL731563.1-201ENST00000442202 214 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AL049830.1-201ENST00000468034 425 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 DEFB108E-201ENST00000524692 240 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 MIR4419B-201ENST00000577260 68 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AC091178.2-201ENST00000584401 117 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AC005972.2-201ENST00000604690 348 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AC021506.2-201ENST00000612354 169 ntBASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC1.46□□□□□ -2.18
PDLIM3Q53GG5 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 SNORA25.1-201ENST00000362326 128 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 Y_RNA.84-201ENST00000363011 104 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 SNORD68-201ENST00000363214 84 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 RNU6-514P-201ENST00000384208 107 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 RNU6-1031P-201ENST00000384773 107 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 MIR520G-201ENST00000385064 90 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 RNU6ATAC2P-201ENST00000387943 126 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 RNU11-5P-201ENST00000391216 129 ntBASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.45□□□□□ -2.18
PDLIM3Q53GG5 HSPE1P24-201ENST00000450782 238 ntBASIC1.45□□□□□ -2.18
Retrieved 100 of 98,524 protein–RNA pairs in 9.2 ms