Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 JPX_2.1-201ENST00000614161 69 ntBASIC2.55□□□□□ -2
SF3A1Q15459 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.54□□□□□ -2
SF3A1Q15459 Y_RNA.20-201ENST00000362479 113 ntBASIC2.54□□□□□ -2
SF3A1Q15459 Y_RNA.122-201ENST00000363331 96 ntBASIC2.54□□□□□ -2
SF3A1Q15459 RNU4-41P-201ENST00000364426 143 ntBASIC2.54□□□□□ -2
SF3A1Q15459 Y_RNA.253-201ENST00000364562 112 ntBASIC2.54□□□□□ -2
SF3A1Q15459 RNU6-144P-201ENST00000383951 107 ntBASIC2.54□□□□□ -2
SF3A1Q15459 MIR221-201ENST00000385135 110 ntBASIC2.54□□□□□ -2
SF3A1Q15459 MIR1267-201ENST00000408723 78 ntBASIC2.54□□□□□ -2
SF3A1Q15459 HMGN2P38-201ENST00000423806 265 ntBASIC2.54□□□□□ -2
SF3A1Q15459 AC110588.1-201ENST00000559699 137 ntBASIC2.54□□□□□ -2
SF3A1Q15459 AC006006.1-201ENST00000603082 144 ntBASIC2.54□□□□□ -2
SF3A1Q15459 AL591926.4-201ENST00000616895 298 ntBASIC2.54□□□□□ -2
SF3A1Q15459 AC073349.3-201ENST00000617616 186 ntBASIC2.54□□□□□ -2
SF3A1Q15459 HAS2-201ENST00000303924 4190 ntAPPRIS P1 TSL 1 (best) BASIC2.53□□□□□ -2
SF3A1Q15459 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.53□□□□□ -2
SF3A1Q15459 MIR126-201ENST00000362291 85 ntBASIC2.53□□□□□ -2
SF3A1Q15459 TRAJ39-201ENST00000390498 63 ntAPPRIS P1 BASIC2.53□□□□□ -2
SF3A1Q15459 RNU4-53P-201ENST00000410828 140 ntBASIC2.53□□□□□ -2
SF3A1Q15459 RN7SKP192-201ENST00000411291 327 ntBASIC2.53□□□□□ -2
SF3A1Q15459 Z98742.3-201ENST00000418637 326 ntBASIC2.53□□□□□ -2
SF3A1Q15459 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC2.53□□□□□ -2
SF3A1Q15459 SNORD2.1-201ENST00000458762 69 ntBASIC2.53□□□□□ -2
SF3A1Q15459 HMGN1P7-201ENST00000491722 313 ntBASIC2.53□□□□□ -2
SF3A1Q15459 MIR4524B-201ENST00000581569 115 ntBASIC2.53□□□□□ -2
SF3A1Q15459 AC021506.2-201ENST00000612354 169 ntBASIC2.53□□□□□ -2
SF3A1Q15459 AC009831.4-201ENST00000620744 325 ntBASIC2.53□□□□□ -2
SF3A1Q15459 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC2.53□□□□□ -2
SF3A1Q15459 RNA5SP425-201ENST00000410336 112 ntBASIC2.52□□□□□ -2.01
SF3A1Q15459 Y_RNA.638-201ENST00000459374 113 ntBASIC2.52□□□□□ -2.01
SF3A1Q15459 snoU13.15-201ENST00000459407 104 ntBASIC2.52□□□□□ -2.01
SF3A1Q15459 MIR4724-201ENST00000579485 89 ntBASIC2.52□□□□□ -2.01
SF3A1Q15459 AL442067.1-201ENST00000613261 223 ntBASIC2.52□□□□□ -2.01
SF3A1Q15459 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC2.52□□□□□ -2.01
SF3A1Q15459 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.52□□□□□ -2.01
SF3A1Q15459 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
SF3A1Q15459 Y_RNA.76-201ENST00000362931 109 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 Y_RNA.269-201ENST00000364685 89 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 Y_RNA.539-201ENST00000384635 107 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 RNU6ATAC37P-201ENST00000408328 131 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 RNU6-383P-201ENST00000410864 94 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 SNRPGP10-201ENST00000432323 225 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 LINC02534-201ENST00000446525 283 ntTSL 3 BASIC2.51□□□□□ -2.01
SF3A1Q15459 AC090255.1-201ENST00000495779 349 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 SNORD116-28-201ENST00000516123 91 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 TRAV1-1-201ENST00000542354 392 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
SF3A1Q15459 MIR2681-201ENST00000581814 105 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 Y_RNA.802-201ENST00000614892 130 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 MIR8074-201ENST00000615081 81 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 MIR6132-201ENST00000622083 109 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.51□□□□□ -2.01
SF3A1Q15459 AL359851.1-201ENST00000569460 4997 ntBASIC2.51□□□□□ -2.01
SF3A1Q15459 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.5□□□□□ -2.01
SF3A1Q15459 RNU4-10P-201ENST00000364383 140 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 RNU6-338P-201ENST00000383888 105 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 Y_RNA.476-201ENST00000384347 108 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 MIR1278-201ENST00000408753 81 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 AC099513.1-201ENST00000490423 301 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 OR9P1P-201ENST00000496431 281 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 RNU6-111P-201ENST00000517179 105 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.5□□□□□ -2.01
SF3A1Q15459 MIR4282-201ENST00000583613 67 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 AC103810.8-201ENST00000607347 118 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC2.5□□□□□ -2.01
SF3A1Q15459 Y_RNA.292-201ENST00000364904 97 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 SNORA8.3-201ENST00000384679 139 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 SNORA12.1-201ENST00000390873 148 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 RNU6-131P-201ENST00000391144 107 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 JTBP1-201ENST00000441314 247 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 SNORA44.1-201ENST00000517031 108 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 RPL23AP91-201ENST00000569211 455 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 MIR4769-201ENST00000584126 77 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 MIR5002-201ENST00000584713 97 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 AL096840.1-201ENST00000603287 93 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC2.49□□□□□ -2.01
SF3A1Q15459 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC2.49□□□□□ -2.01
SF3A1Q15459 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC2.48□□□□□ -2.01
SF3A1Q15459 RNU6-674P-201ENST00000363831 107 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 RNU6-203P-201ENST00000384038 104 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 RNU4-52P-201ENST00000384209 138 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 CALM2P4-201ENST00000430810 426 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 Z98949.2-201ENST00000440996 144 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 PGBD4P5-201ENST00000445958 426 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 AC068658.1-201ENST00000507509 388 ntTSL 2 BASIC2.48□□□□□ -2.01
SF3A1Q15459 RNA5SP200-201ENST00000516360 103 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 Y_RNA.714-201ENST00000517065 90 ntBASIC2.48□□□□□ -2.01
SF3A1Q15459 AC068700.1-201ENST00000565862 3754 ntBASIC2.47□□□□□ -2.01
SF3A1Q15459 RNU6-1209P-201ENST00000363655 107 ntBASIC2.47□□□□□ -2.01
SF3A1Q15459 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC2.47□□□□□ -2.01
SF3A1Q15459 RNU4-71P-201ENST00000516258 113 ntBASIC2.47□□□□□ -2.01
SF3A1Q15459 RNA5SP168-201ENST00000516642 112 ntBASIC2.47□□□□□ -2.01
SF3A1Q15459 CARD18-203ENST00000532895 422 ntTSL 2 BASIC2.47□□□□□ -2.01
SF3A1Q15459 MIR4648-201ENST00000580107 72 ntBASIC2.47□□□□□ -2.01
SF3A1Q15459 SNORD3E-202ENST00000627253 216 ntBASIC2.47□□□□□ -2.01
SF3A1Q15459 RNU6-163P-201ENST00000384396 106 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 MIR30A-201ENST00000385092 71 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 SNORA48.3-201ENST00000391081 134 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 U8.16-201ENST00000391279 133 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 HMGN2P23-201ENST00000456759 269 ntBASIC2.46□□□□□ -2.02
SF3A1Q15459 IGKV3-31-201ENST00000523109 329 ntBASIC2.46□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 96.3 ms