Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MIR802-201ENST00000390235 94 ntBASIC2.73□□□□□ -1.97
RNF4P78317 AL603914.1-201ENST00000401964 204 ntBASIC2.73□□□□□ -1.97
RNF4P78317 HIST1H2APS3-201ENST00000403259 134 ntBASIC2.73□□□□□ -1.97
RNF4P78317 RNU6-1064P-201ENST00000410626 104 ntBASIC2.73□□□□□ -1.97
RNF4P78317 RN7SKP284-201ENST00000411002 343 ntBASIC2.73□□□□□ -1.97
RNF4P78317 EEF1A1P41-201ENST00000414667 207 ntBASIC2.73□□□□□ -1.97
RNF4P78317 UQCRHP3-201ENST00000451503 251 ntBASIC2.73□□□□□ -1.97
RNF4P78317 RNU7-94P-201ENST00000459576 63 ntBASIC2.73□□□□□ -1.97
RNF4P78317 RNU6-693P-201ENST00000516134 107 ntBASIC2.73□□□□□ -1.97
RNF4P78317 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC2.73□□□□□ -1.97
RNF4P78317 AC133485.4-201ENST00000561835 220 ntBASIC2.73□□□□□ -1.97
RNF4P78317 MTND5P34-201ENST00000568888 325 ntBASIC2.73□□□□□ -1.97
RNF4P78317 AC138907.4-201ENST00000570107 226 ntBASIC2.73□□□□□ -1.97
RNF4P78317 MIR6129-201ENST00000616087 109 ntBASIC2.73□□□□□ -1.97
RNF4P78317 AL449363.1-201ENST00000617815 186 ntBASIC2.73□□□□□ -1.97
RNF4P78317 TCF12-203ENST00000343827 3956 ntTSL 1 (best) BASIC2.73□□□□□ -1.97
RNF4P78317 GABRG2-221ENST00000639683 3600 ntTSL 5 BASIC2.73□□□□□ -1.97
RNF4P78317 SNORA9.2-201ENST00000365361 133 ntBASIC2.72□□□□□ -1.97
RNF4P78317 RNU6-429P-201ENST00000384582 108 ntBASIC2.72□□□□□ -1.97
RNF4P78317 RNU6-476P-201ENST00000384726 107 ntBASIC2.72□□□□□ -1.97
RNF4P78317 RNA5SP109-201ENST00000391010 116 ntBASIC2.72□□□□□ -1.97
RNF4P78317 SNORA40.5-201ENST00000391061 128 ntBASIC2.72□□□□□ -1.97
RNF4P78317 MIR891A-201ENST00000401237 79 ntBASIC2.72□□□□□ -1.97
RNF4P78317 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC2.72□□□□□ -1.97
RNF4P78317 VTRNA2-2P-201ENST00000516091 103 ntBASIC2.72□□□□□ -1.97
RNF4P78317 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.72□□□□□ -1.97
RNF4P78317 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC2.72□□□□□ -1.97
RNF4P78317 MIR6733-201ENST00000635723 61 ntBASIC2.72□□□□□ -1.97
RNF4P78317 MIR3914-2-201ENST00000637339 95 ntBASIC2.72□□□□□ -1.97
RNF4P78317 AC093010.3-201ENST00000570269 15214 ntBASIC2.72□□□□□ -1.97
RNF4P78317 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC2.72□□□□□ -1.97
RNF4P78317 AC093831.2-201ENST00000624393 3427 ntBASIC2.71□□□□□ -1.98
RNF4P78317 RNU6-834P-201ENST00000362367 110 ntBASIC2.71□□□□□ -1.98
RNF4P78317 RNU6-888P-201ENST00000363010 101 ntBASIC2.71□□□□□ -1.98
RNF4P78317 SNORD24-201ENST00000383884 75 ntBASIC2.71□□□□□ -1.98
RNF4P78317 MIR548A2-201ENST00000384956 97 ntBASIC2.71□□□□□ -1.98
RNF4P78317 NDUFB4P4-201ENST00000404822 243 ntBASIC2.71□□□□□ -1.98
RNF4P78317 Y_RNA.630-201ENST00000411370 108 ntBASIC2.71□□□□□ -1.98
RNF4P78317 AC245047.3-201ENST00000429428 127 ntBASIC2.71□□□□□ -1.98
RNF4P78317 FTH1P12-201ENST00000432137 551 ntBASIC2.71□□□□□ -1.98
RNF4P78317 SNRPGP13-201ENST00000442212 177 ntBASIC2.71□□□□□ -1.98
RNF4P78317 RN7SKP43-201ENST00000516173 320 ntBASIC2.71□□□□□ -1.98
RNF4P78317 SNORD33.1-201ENST00000516213 88 ntBASIC2.71□□□□□ -1.98
RNF4P78317 RPPH1-2P-201ENST00000516688 293 ntBASIC2.71□□□□□ -1.98
RNF4P78317 Y_RNA.714-201ENST00000517065 90 ntBASIC2.71□□□□□ -1.98
RNF4P78317 IGHVIII-67-2-201ENST00000519849 88 ntBASIC2.71□□□□□ -1.98
RNF4P78317 AC124657.1-201ENST00000527819 429 ntTSL 3 BASIC2.71□□□□□ -1.98
RNF4P78317 CYCSP26-201ENST00000534107 320 ntBASIC2.71□□□□□ -1.98
RNF4P78317 AC091544.4-201ENST00000555268 342 ntBASIC2.71□□□□□ -1.98
RNF4P78317 AL022345.2-201ENST00000606307 135 ntBASIC2.71□□□□□ -1.98
RNF4P78317 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC2.71□□□□□ -1.98
RNF4P78317 CTSLP2-204ENST00000629029 392 ntBASIC2.71□□□□□ -1.98
RNF4P78317 SACS-201ENST00000382292 15324 ntAPPRIS P1 TSL 5 BASIC2.71□□□□□ -1.98
RNF4P78317 GRAMD1C-202ENST00000440446 3475 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
RNF4P78317 CUL3-204ENST00000409777 3147 ntTSL 1 (best) BASIC2.71□□□□□ -1.98
RNF4P78317 BX510359.4-201ENST00000423750 193 ntBASIC2.7□□□□□ -1.98
RNF4P78317 AL139132.1-201ENST00000431587 344 ntBASIC2.7□□□□□ -1.98
RNF4P78317 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.7□□□□□ -1.98
RNF4P78317 AC087685.1-201ENST00000587507 141 ntBASIC2.7□□□□□ -1.98
RNF4P78317 AL137790.1-201ENST00000634283 177 ntBASIC2.7□□□□□ -1.98
RNF4P78317 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
RNF4P78317 AC096644.4-201ENST00000563417 2912 ntBASIC2.7□□□□□ -1.98
RNF4P78317 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.7□□□□□ -1.98
RNF4P78317 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.69□□□□□ -1.98
RNF4P78317 AC108206.1-201ENST00000570186 4159 ntBASIC2.69□□□□□ -1.98
RNF4P78317 RNU1-148P-201ENST00000384472 162 ntBASIC2.69□□□□□ -1.98
RNF4P78317 MIR518F-201ENST00000384973 87 ntBASIC2.69□□□□□ -1.98
RNF4P78317 AL031386.1-201ENST00000411940 142 ntTSL 5 BASIC2.69□□□□□ -1.98
RNF4P78317 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC2.69□□□□□ -1.98
RNF4P78317 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.69□□□□□ -1.98
RNF4P78317 Y_RNA.651-201ENST00000459380 103 ntBASIC2.69□□□□□ -1.98
RNF4P78317 RN7SL297P-201ENST00000483161 293 ntBASIC2.69□□□□□ -1.98
RNF4P78317 RNU6-781P-201ENST00000516377 101 ntBASIC2.69□□□□□ -1.98
RNF4P78317 MIR3126-201ENST00000577443 74 ntBASIC2.69□□□□□ -1.98
RNF4P78317 RPL12P50-201ENST00000603116 116 ntBASIC2.69□□□□□ -1.98
RNF4P78317 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.69□□□□□ -1.98
RNF4P78317 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.69□□□□□ -1.98
RNF4P78317 ANKRD18EP-201ENST00000405487 2632 ntBASIC2.69□□□□□ -1.98
RNF4P78317 OR4C11-202ENST00000641580 2737 ntAPPRIS P1 BASIC2.69□□□□□ -1.98
RNF4P78317 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC2.68□□□□□ -1.98
RNF4P78317 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.68□□□□□ -1.98
RNF4P78317 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.68□□□□□ -1.98
RNF4P78317 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.68□□□□□ -1.98
RNF4P78317 RNU1-58P-201ENST00000362413 163 ntBASIC2.68□□□□□ -1.98
RNF4P78317 RNU6-1084P-201ENST00000362498 107 ntBASIC2.68□□□□□ -1.98
RNF4P78317 SNORA63.4-201ENST00000362763 126 ntBASIC2.68□□□□□ -1.98
RNF4P78317 Y_RNA.265-201ENST00000364677 108 ntBASIC2.68□□□□□ -1.98
RNF4P78317 RNU6-1144P-201ENST00000384247 104 ntBASIC2.68□□□□□ -1.98
RNF4P78317 MIR597-201ENST00000384968 97 ntBASIC2.68□□□□□ -1.98
RNF4P78317 SNORA11.4-201ENST00000408823 129 ntBASIC2.68□□□□□ -1.98
RNF4P78317 COTL1P1-201ENST00000422309 375 ntBASIC2.68□□□□□ -1.98
RNF4P78317 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC2.68□□□□□ -1.98
RNF4P78317 AF228730.3-201ENST00000436691 102 ntBASIC2.68□□□□□ -1.98
RNF4P78317 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC2.68□□□□□ -1.98
RNF4P78317 RNU6-826P-201ENST00000516827 104 ntBASIC2.68□□□□□ -1.98
RNF4P78317 AC021785.1-201ENST00000520780 453 ntTSL 3 BASIC2.68□□□□□ -1.98
RNF4P78317 AC108081.1-201ENST00000604358 221 ntBASIC2.68□□□□□ -1.98
RNF4P78317 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC2.67□□□□□ -1.98
RNF4P78317 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC2.67□□□□□ -1.98
RNF4P78317 SNORD14E-201ENST00000364009 85 ntBASIC2.67□□□□□ -1.98
Retrieved 100 of 98,524 protein–RNA pairs in 126.8 ms