Protein–RNA interactions for Protein: P48378

RFX2, DNA-binding protein RFX2, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX2P48378 AP000550.4-201ENST00000639507 358 ntTSL 3 BASIC1.87□□□□□ -2.11
RFX2P48378 OR2L2-203ENST00000642011 4225 ntAPPRIS P1 BASIC1.86□□□□□ -2.11
RFX2P48378 RNU6-1130P-201ENST00000365434 107 ntBASIC1.86□□□□□ -2.11
RFX2P48378 Y_RNA.357-201ENST00000365487 109 ntBASIC1.86□□□□□ -2.11
RFX2P48378 SNORA70.4-201ENST00000365509 134 ntBASIC1.86□□□□□ -2.11
RFX2P48378 SNORD116-18-201ENST00000383961 92 ntBASIC1.86□□□□□ -2.11
RFX2P48378 Y_RNA.441-201ENST00000384123 112 ntBASIC1.86□□□□□ -2.11
RFX2P48378 RNU6-187P-201ENST00000384139 106 ntBASIC1.86□□□□□ -2.11
RFX2P48378 Y_RNA.506-201ENST00000384494 102 ntBASIC1.86□□□□□ -2.11
RFX2P48378 RNU6-125P-201ENST00000384505 107 ntBASIC1.86□□□□□ -2.11
RFX2P48378 RNU6-1228P-201ENST00000391014 107 ntBASIC1.86□□□□□ -2.11
RFX2P48378 SNORA48.3-201ENST00000391081 134 ntBASIC1.86□□□□□ -2.11
RFX2P48378 Y_RNA.622-201ENST00000411091 108 ntBASIC1.86□□□□□ -2.11
RFX2P48378 AC234781.5-201ENST00000508429 271 ntBASIC1.86□□□□□ -2.11
RFX2P48378 RNA5SP148-201ENST00000516527 94 ntBASIC1.86□□□□□ -2.11
RFX2P48378 AC006023.1-201ENST00000603944 259 ntBASIC1.86□□□□□ -2.11
RFX2P48378 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.86□□□□□ -2.11
RFX2P48378 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC1.86□□□□□ -2.11
RFX2P48378 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
RFX2P48378 RNU6-1209P-201ENST00000363655 107 ntBASIC1.85□□□□□ -2.11
RFX2P48378 RNU4-84P-201ENST00000364200 139 ntBASIC1.85□□□□□ -2.11
RFX2P48378 Y_RNA.796-201ENST00000364268 102 ntBASIC1.85□□□□□ -2.11
RFX2P48378 Y_RNA.799-201ENST00000364992 102 ntBASIC1.85□□□□□ -2.11
RFX2P48378 SNORA67.4-201ENST00000384688 142 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR515-2-201ENST00000384883 83 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR515-1-201ENST00000384884 83 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR128-1-201ENST00000384921 82 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR518A2-201ENST00000384966 87 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR15B-201ENST00000385045 98 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR483-201ENST00000385070 76 ntBASIC1.85□□□□□ -2.11
RFX2P48378 AL512604.1-201ENST00000404812 257 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR1283-2-201ENST00000408621 87 ntBASIC1.85□□□□□ -2.11
RFX2P48378 RN7SKP101-201ENST00000411376 320 ntBASIC1.85□□□□□ -2.11
RFX2P48378 HMGN2P3-201ENST00000433603 273 ntBASIC1.85□□□□□ -2.11
RFX2P48378 RPL23AP83-201ENST00000434984 473 ntBASIC1.85□□□□□ -2.11
RFX2P48378 HMGN2P5-201ENST00000436882 273 ntBASIC1.85□□□□□ -2.11
RFX2P48378 AL606517.2-201ENST00000442855 241 ntBASIC1.85□□□□□ -2.11
RFX2P48378 RPS26P45-201ENST00000471748 340 ntBASIC1.85□□□□□ -2.11
RFX2P48378 RNU6-346P-201ENST00000516288 111 ntBASIC1.85□□□□□ -2.11
RFX2P48378 AC024995.1-201ENST00000523014 93 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR5094-201ENST00000578766 85 ntBASIC1.85□□□□□ -2.11
RFX2P48378 AC005786.1-201ENST00000588553 154 ntBASIC1.85□□□□□ -2.11
RFX2P48378 AL021707.8-201ENST00000609428 183 ntBASIC1.85□□□□□ -2.11
RFX2P48378 MIR6817-201ENST00000615588 66 ntBASIC1.85□□□□□ -2.11
RFX2P48378 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.85□□□□□ -2.11
RFX2P48378 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
RFX2P48378 RNU6-728P-201ENST00000365375 104 ntBASIC1.84□□□□□ -2.11
RFX2P48378 RNU6-746P-201ENST00000384112 109 ntBASIC1.84□□□□□ -2.11
RFX2P48378 RNU11-5P-201ENST00000391216 129 ntBASIC1.84□□□□□ -2.11
RFX2P48378 RNA5SP496-201ENST00000391240 109 ntBASIC1.84□□□□□ -2.11
RFX2P48378 HMGN2P39-201ENST00000398005 273 ntBASIC1.84□□□□□ -2.11
RFX2P48378 SNORA11.4-201ENST00000408823 129 ntBASIC1.84□□□□□ -2.11
RFX2P48378 RNA5SP270-201ENST00000411361 118 ntBASIC1.84□□□□□ -2.11
RFX2P48378 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC1.84□□□□□ -2.11
RFX2P48378 RNU6-341P-201ENST00000516973 96 ntBASIC1.84□□□□□ -2.11
RFX2P48378 AC074050.1-201ENST00000563247 211 ntBASIC1.84□□□□□ -2.11
RFX2P48378 MIR4319-201ENST00000577285 85 ntBASIC1.84□□□□□ -2.11
RFX2P48378 MIR4431-201ENST00000579990 94 ntBASIC1.84□□□□□ -2.11
RFX2P48378 AC012493.3-201ENST00000604494 112 ntBASIC1.84□□□□□ -2.11
RFX2P48378 JPX_2.1-201ENST00000614161 69 ntBASIC1.84□□□□□ -2.11
RFX2P48378 DYNC2H1-203ENST00000398093 12945 ntAPPRIS P3 TSL 5 BASIC1.83□□□□□ -2.12
RFX2P48378 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
RFX2P48378 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.83□□□□□ -2.12
RFX2P48378 SNORA1B-201ENST00000362535 133 ntBASIC1.83□□□□□ -2.12
RFX2P48378 SNORD45.3-201ENST00000363836 72 ntBASIC1.83□□□□□ -2.12
RFX2P48378 Y_RNA.253-201ENST00000364562 112 ntBASIC1.83□□□□□ -2.12
RFX2P48378 SNORA48.2-201ENST00000390926 124 ntBASIC1.83□□□□□ -2.12
RFX2P48378 RNA5SP109-201ENST00000391010 116 ntBASIC1.83□□□□□ -2.12
RFX2P48378 RNU4-61P-201ENST00000411243 107 ntBASIC1.83□□□□□ -2.12
RFX2P48378 AC006461.1-201ENST00000412637 326 ntBASIC1.83□□□□□ -2.12
RFX2P48378 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.83□□□□□ -2.12
RFX2P48378 SNORD11-201ENST00000459124 84 ntBASIC1.83□□□□□ -2.12
RFX2P48378 RNU7-200P-201ENST00000516105 62 ntBASIC1.83□□□□□ -2.12
RFX2P48378 Y_RNA.703-201ENST00000516846 111 ntBASIC1.83□□□□□ -2.12
RFX2P48378 MIR2681-201ENST00000581814 105 ntBASIC1.83□□□□□ -2.12
RFX2P48378 AC022217.4-201ENST00000604389 163 ntBASIC1.83□□□□□ -2.12
RFX2P48378 MIR6132-201ENST00000622083 109 ntBASIC1.83□□□□□ -2.12
RFX2P48378 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
RFX2P48378 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.83□□□□□ -2.12
RFX2P48378 AC062016.1-201ENST00000355719 319 ntBASIC1.82□□□□□ -2.12
RFX2P48378 Y_RNA.111-201ENST00000363248 100 ntBASIC1.82□□□□□ -2.12
RFX2P48378 RNU6-818P-201ENST00000364837 108 ntBASIC1.82□□□□□ -2.12
RFX2P48378 RNA5SP489-201ENST00000410986 109 ntBASIC1.82□□□□□ -2.12
RFX2P48378 LINC01201-201ENST00000412420 294 ntTSL 3 BASIC1.82□□□□□ -2.12
RFX2P48378 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC1.82□□□□□ -2.12
RFX2P48378 AC108938.1-201ENST00000451204 136 ntBASIC1.82□□□□□ -2.12
RFX2P48378 SNRPGP8-201ENST00000454064 226 ntBASIC1.82□□□□□ -2.12
RFX2P48378 AC005840.1-201ENST00000498412 377 ntBASIC1.82□□□□□ -2.12
RFX2P48378 AC107027.2-201ENST00000512197 115 ntBASIC1.82□□□□□ -2.12
RFX2P48378 RNVU1-2-201ENST00000516326 135 ntBASIC1.82□□□□□ -2.12
RFX2P48378 RNA5SP200-201ENST00000516360 103 ntBASIC1.82□□□□□ -2.12
RFX2P48378 AC084364.2-201ENST00000546924 395 ntBASIC1.82□□□□□ -2.12
RFX2P48378 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC1.82□□□□□ -2.12
RFX2P48378 CERS6-AS1-202ENST00000594898 499 ntTSL 5 BASIC1.82□□□□□ -2.12
RFX2P48378 AC069114.2-201ENST00000604699 304 ntBASIC1.82□□□□□ -2.12
RFX2P48378 AL033523.1-201ENST00000605153 153 ntBASIC1.82□□□□□ -2.12
RFX2P48378 AC005000.2-201ENST00000605468 310 ntBASIC1.82□□□□□ -2.12
RFX2P48378 MIR7106-201ENST00000612419 65 ntBASIC1.82□□□□□ -2.12
RFX2P48378 CGGBP1-202ENST00000398392 5298 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
RFX2P48378 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC1.81□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 129.7 ms