Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 MIR378A-201ENST00000362177 66 ntBASIC1.4□□□□□ -2.19
SOX3P41225 Y_RNA.47-201ENST00000362697 108 ntBASIC1.4□□□□□ -2.19
SOX3P41225 Y_RNA.84-201ENST00000363011 104 ntBASIC1.4□□□□□ -2.19
SOX3P41225 Y_RNA.267-201ENST00000364679 109 ntBASIC1.4□□□□□ -2.19
SOX3P41225 Y_RNA.376-201ENST00000365638 108 ntBASIC1.4□□□□□ -2.19
SOX3P41225 Y_RNA.574-201ENST00000384766 95 ntBASIC1.4□□□□□ -2.19
SOX3P41225 TRAJ48-201ENST00000390489 63 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
SOX3P41225 SNORA12.1-201ENST00000390873 148 ntBASIC1.4□□□□□ -2.19
SOX3P41225 RNU6-1248P-201ENST00000391096 64 ntBASIC1.4□□□□□ -2.19
SOX3P41225 AL034345.1-201ENST00000407768 123 ntBASIC1.4□□□□□ -2.19
SOX3P41225 MIR1267-201ENST00000408723 78 ntBASIC1.4□□□□□ -2.19
SOX3P41225 RNU6-1291P-201ENST00000516591 104 ntBASIC1.4□□□□□ -2.19
SOX3P41225 RNU7-28P-201ENST00000516759 62 ntBASIC1.4□□□□□ -2.19
SOX3P41225 RNU6-570P-201ENST00000517051 105 ntBASIC1.4□□□□□ -2.19
SOX3P41225 AC007991.3-201ENST00000517623 502 ntTSL 4 BASIC1.4□□□□□ -2.19
SOX3P41225 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.4□□□□□ -2.19
SOX3P41225 AL161670.1-201ENST00000554348 137 ntBASIC1.4□□□□□ -2.19
SOX3P41225 MIR3198-2-201ENST00000577868 80 ntBASIC1.4□□□□□ -2.19
SOX3P41225 PRR13P7-201ENST00000605538 430 ntBASIC1.4□□□□□ -2.19
SOX3P41225 AC021506.2-201ENST00000612354 169 ntBASIC1.4□□□□□ -2.19
SOX3P41225 AP001282.2-201ENST00000616149 309 ntBASIC1.4□□□□□ -2.19
SOX3P41225 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.4□□□□□ -2.19
SOX3P41225 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.4□□□□□ -2.19
SOX3P41225 AC100821.1-201ENST00000523153 2479 ntBASIC1.4□□□□□ -2.19
SOX3P41225 SNORA1B-201ENST00000362535 133 ntBASIC1.39□□□□□ -2.19
SOX3P41225 RNU4-80P-201ENST00000363200 141 ntBASIC1.39□□□□□ -2.19
SOX3P41225 RNU4-13P-201ENST00000364019 141 ntBASIC1.39□□□□□ -2.19
SOX3P41225 RNU6-290P-201ENST00000365212 101 ntBASIC1.39□□□□□ -2.19
SOX3P41225 RNU6-1323P-201ENST00000384025 107 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC1.39□□□□□ -2.19
SOX3P41225 BTF3P4-201ENST00000418852 495 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AJ239322.2-201ENST00000421696 575 ntTSL 5 BASIC1.39□□□□□ -2.19
SOX3P41225 MTND3P2-201ENST00000438452 342 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC233266.1-201ENST00000454518 96 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.39□□□□□ -2.19
SOX3P41225 RNU1-98P-201ENST00000458992 160 ntBASIC1.39□□□□□ -2.19
SOX3P41225 RNU7-34P-201ENST00000459394 64 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AL049830.1-201ENST00000468034 425 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC023790.1-201ENST00000482174 347 ntBASIC1.39□□□□□ -2.19
SOX3P41225 RNU6-191P-201ENST00000516295 94 ntBASIC1.39□□□□□ -2.19
SOX3P41225 RNU2-56P-201ENST00000516826 190 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC136628.3-201ENST00000521868 290 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC1.39□□□□□ -2.19
SOX3P41225 SNORA28-201ENST00000606769 126 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC242852.1-201ENST00000612151 96 ntBASIC1.39□□□□□ -2.19
SOX3P41225 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC244015.1-201ENST00000622301 99 ntBASIC1.39□□□□□ -2.19
SOX3P41225 AC025539.1-201ENST00000515343 4019 ntTSL 2 BASIC1.39□□□□□ -2.19
SOX3P41225 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.38□□□□□ -2.19
SOX3P41225 MIR424-201ENST00000362227 98 ntBASIC1.38□□□□□ -2.19
SOX3P41225 RNU6-326P-201ENST00000365480 107 ntBASIC1.38□□□□□ -2.19
SOX3P41225 MIR1304-201ENST00000408243 91 ntBASIC1.38□□□□□ -2.19
SOX3P41225 RNU6-1203P-201ENST00000410703 110 ntBASIC1.38□□□□□ -2.19
SOX3P41225 AC004965.1-201ENST00000413033 213 ntBASIC1.38□□□□□ -2.19
SOX3P41225 MTCYBP9-201ENST00000431021 303 ntBASIC1.38□□□□□ -2.19
SOX3P41225 snoU13.9-201ENST00000458927 103 ntBASIC1.38□□□□□ -2.19
SOX3P41225 MTCO2P24-201ENST00000515611 426 ntBASIC1.38□□□□□ -2.19
SOX3P41225 SNORA31.24-201ENST00000517232 57 ntBASIC1.38□□□□□ -2.19
SOX3P41225 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.38□□□□□ -2.19
SOX3P41225 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC1.38□□□□□ -2.19
SOX3P41225 AC011604.1-201ENST00000545978 196 ntBASIC1.38□□□□□ -2.19
SOX3P41225 MIR4285-201ENST00000581001 85 ntBASIC1.38□□□□□ -2.19
SOX3P41225 MIR8062-201ENST00000621515 85 ntBASIC1.38□□□□□ -2.19
SOX3P41225 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
SOX3P41225 RNU6-801P-201ENST00000364087 105 ntBASIC1.37□□□□□ -2.19
SOX3P41225 Y_RNA.265-201ENST00000364677 108 ntBASIC1.37□□□□□ -2.19
SOX3P41225 SNORA72-201ENST00000384339 132 ntBASIC1.37□□□□□ -2.19
SOX3P41225 snosnR66.1-201ENST00000391095 99 ntBASIC1.37□□□□□ -2.19
SOX3P41225 RNA5SP482-201ENST00000391269 118 ntBASIC1.37□□□□□ -2.19
SOX3P41225 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.37□□□□□ -2.19
SOX3P41225 AL354695.1-201ENST00000427935 228 ntBASIC1.37□□□□□ -2.19
SOX3P41225 MTCO1P5-201ENST00000433573 344 ntBASIC1.37□□□□□ -2.19
SOX3P41225 STAG3L5P-204ENST00000443759 179 ntBASIC1.37□□□□□ -2.19
SOX3P41225 AC005908.1-201ENST00000468701 347 ntBASIC1.37□□□□□ -2.19
SOX3P41225 OR9P1P-201ENST00000496431 281 ntBASIC1.37□□□□□ -2.19
SOX3P41225 RNU7-116P-201ENST00000516940 62 ntBASIC1.37□□□□□ -2.19
SOX3P41225 RNU2-31P-201ENST00000516954 155 ntBASIC1.37□□□□□ -2.19
SOX3P41225 MIR4503-201ENST00000582187 83 ntBASIC1.37□□□□□ -2.19
SOX3P41225 AL162730.1-201ENST00000605734 292 ntBASIC1.37□□□□□ -2.19
SOX3P41225 AL512598.1-201ENST00000610158 273 ntBASIC1.37□□□□□ -2.19
SOX3P41225 AC068647.2-201ENST00000637380 353 ntBASIC1.37□□□□□ -2.19
SOX3P41225 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC1.37□□□□□ -2.19
SOX3P41225 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
SOX3P41225 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
SOX3P41225 MIR126-201ENST00000362291 85 ntBASIC1.36□□□□□ -2.19
SOX3P41225 RNU6-1123P-201ENST00000362347 106 ntBASIC1.36□□□□□ -2.19
SOX3P41225 SNORA53-201ENST00000391141 249 ntBASIC1.36□□□□□ -2.19
SOX3P41225 MIR934-201ENST00000401241 83 ntBASIC1.36□□□□□ -2.19
SOX3P41225 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.36□□□□□ -2.19
SOX3P41225 RNU2-14P-201ENST00000411053 191 ntBASIC1.36□□□□□ -2.19
SOX3P41225 AP1B1P2-201ENST00000416196 106 ntBASIC1.36□□□□□ -2.19
SOX3P41225 AL590705.2-201ENST00000420204 281 ntTSL 5 BASIC1.36□□□□□ -2.19
SOX3P41225 Z98949.2-201ENST00000440996 144 ntBASIC1.36□□□□□ -2.19
SOX3P41225 PGBD4P5-201ENST00000445958 426 ntBASIC1.36□□□□□ -2.19
SOX3P41225 MTND4LP30-201ENST00000454092 297 ntBASIC1.36□□□□□ -2.19
SOX3P41225 RNU7-95P-201ENST00000459222 64 ntBASIC1.36□□□□□ -2.19
SOX3P41225 MTND1P19-201ENST00000511780 315 ntBASIC1.36□□□□□ -2.19
SOX3P41225 RNU6-970P-201ENST00000516312 107 ntBASIC1.36□□□□□ -2.19
SOX3P41225 DNAJC19P9-201ENST00000555084 351 ntBASIC1.36□□□□□ -2.19
SOX3P41225 AP003357.1-201ENST00000604497 148 ntBASIC1.36□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms