Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 Y_RNA.38-201ENST00000362617 102 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 RNU6-454P-201ENST00000364292 107 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 RNA5SP266-201ENST00000410273 108 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 RNU6-1001P-201ENST00000411265 100 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 RNU6-566P-201ENST00000516790 107 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 MTND3P12-201ENST00000559068 328 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 Pinc.1-201ENST00000616452 154 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 AC090625.1-201ENST00000357130 210 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 SNORD95.1-201ENST00000364099 68 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 MIR15B-201ENST00000385045 98 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 SNORD105-201ENST00000386910 85 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 RNU6-994P-201ENST00000410507 111 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 Y_RNA.621-201ENST00000411065 96 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC0.27□□□□□ -2.37
COL18A1P39060 USP9YP30-201ENST00000430729 455 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 MTND1P26-201ENST00000440488 538 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 SNRPGP12-201ENST00000449481 213 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 ELOCP24-201ENST00000456370 334 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 Y_RNA.704-201ENST00000516851 102 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 SNORA18.7-201ENST00000516910 131 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 AC022616.4-201ENST00000522985 181 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC0.27□□□□□ -2.37
COL18A1P39060 MIR4493-201ENST00000584016 73 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 AC006380.1-201ENST00000603598 186 ntBASIC0.27□□□□□ -2.37
COL18A1P39060 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC0.27□□□□□ -2.37
COL18A1P39060 RNY1P16-201ENST00000363063 111 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 RNU6-879P-201ENST00000364328 108 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 Y_RNA.557-201ENST00000384680 107 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 RNA5SP222-201ENST00000411039 105 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 AL392103.1-201ENST00000447000 198 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC0.26□□□□□ -2.37
COL18A1P39060 RNU7-87P-201ENST00000459343 62 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 RNU6-625P-201ENST00000459412 107 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 RNU7-41P-201ENST00000515917 61 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 RNU6-63P-201ENST00000516690 95 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 AC108676.2-201ENST00000605225 163 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 AL591926.4-201ENST00000616895 298 ntBASIC0.26□□□□□ -2.37
COL18A1P39060 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.25□□□□□ -2.37
COL18A1P39060 SNORD14.1-201ENST00000365609 90 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 RNU6-306P-201ENST00000384617 107 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 MIR516B2-201ENST00000385190 85 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 MLLT10P1-201ENST00000418346 262 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.25□□□□□ -2.37
COL18A1P39060 RNU6-314P-201ENST00000516574 104 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 AC023442.1-201ENST00000531247 422 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 MIR4667-201ENST00000578933 66 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 MIR4300-201ENST00000581016 96 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 MTRNR2L2-201ENST00000604882 87 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 MIR6128-201ENST00000615528 109 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 AC024614.3-201ENST00000637860 256 ntBASIC0.25□□□□□ -2.37
COL18A1P39060 Y_RNA.2-201ENST00000362330 96 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 Y_RNA.185-201ENST00000363894 100 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 snoU2-30.1-201ENST00000365012 70 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 RNU6-945P-201ENST00000383947 107 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 SNORA36.2-201ENST00000384004 127 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 AC002350.1-201ENST00000490759 375 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 RNU6-864P-201ENST00000516256 108 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 Y_RNA.700-201ENST00000516806 100 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 RNU6-1088P-201ENST00000516850 104 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 MIR2355-201ENST00000517199 87 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC0.24□□□□□ -2.37
COL18A1P39060 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC0.24□□□□□ -2.37
COL18A1P39060 AL357075.2-201ENST00000614906 189 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 AC240442.1-201ENST00000616055 283 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 MIR6516-201ENST00000630554 81 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 RNU6-842P-201ENST00000384269 107 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 Y_RNA.572-201ENST00000384757 98 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC0.24□□□□□ -2.37
COL18A1P39060 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC0.24□□□□□ -2.37
COL18A1P39060 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC0.24□□□□□ -2.37
COL18A1P39060 SNORD45.4-201ENST00000516629 73 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 AP001180.6-201ENST00000584918 159 ntBASIC0.24□□□□□ -2.37
COL18A1P39060 RNU6-451P-201ENST00000362921 107 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 RNA5SP48-201ENST00000363969 126 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 U8.5-201ENST00000364528 136 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 RNU6-1297P-201ENST00000384415 104 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 SNORA8.3-201ENST00000384679 139 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 AC009161.1-201ENST00000417306 376 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 DLGAP5P1-201ENST00000430307 464 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 MTND3P21-201ENST00000433774 331 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 MTND1P4-201ENST00000435196 415 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 RN7SKP12-201ENST00000516275 143 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 RNA5SP134-201ENST00000516492 96 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 RNU6-1337P-201ENST00000516525 95 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 AC093027.1-201ENST00000546698 429 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC0.23□□□□□ -2.37
COL18A1P39060 MIR3942-201ENST00000585264 109 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 AC125232.2-201ENST00000592457 143 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 HOTAIR_3.1-201ENST00000611352 97 ntBASIC0.23□□□□□ -2.37
COL18A1P39060 SLC8A1-AS1-230ENST00000627538 212 ntTSL 5 BASIC0.23□□□□□ -2.37
COL18A1P39060 SNORD18A-201ENST00000363753 72 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 RNU6-923P-201ENST00000364753 107 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 Y_RNA.402-201ENST00000383972 102 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 SNORA2B-201ENST00000384583 137 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 MIR522-201ENST00000385071 87 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 MIR1827-201ENST00000408549 66 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 RNU6-1304P-201ENST00000411374 106 ntBASIC0.22□□□□□ -2.37
COL18A1P39060 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC0.22□□□□□ -2.37
COL18A1P39060 NCKAP5-IT1-201ENST00000416437 554 ntTSL 4 BASIC0.22□□□□□ -2.37
COL18A1P39060 RN7SKP164-201ENST00000516138 266 ntBASIC0.22□□□□□ -2.37
Retrieved 100 of 98,524 protein–RNA pairs in 105.2 ms