Protein–RNA interactions for Protein: P35498

SCN1A, Sodium channel protein type 1 subunit alpha, humanhuman

Predictions only

Length 2,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1AP35498 Y_RNA.80-201ENST00000362996 102 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 SNORA70.7-201ENST00000384159 133 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 Y_RNA.485-201ENST00000384395 102 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 RNY1P4-201ENST00000384595 115 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 MTCO3P10-201ENST00000455912 772 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 RNU7-40P-201ENST00000516397 64 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 MIR3664-201ENST00000579074 99 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 MIR4762-201ENST00000585261 75 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 POLR3GP1-201ENST00000594073 261 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 AC073349.3-201ENST00000617616 186 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 RNU4-76P-201ENST00000364509 141 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 SNORD38C-201ENST00000384381 69 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 RNU6-1065P-201ENST00000384513 106 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 CPEB3_ribozyme.1-201ENST00000408115 78 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 RNA5SP511-201ENST00000410487 115 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 RNU5A-5P-201ENST00000411054 116 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 AC005042.3-201ENST00000453230 174 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 U8.20-201ENST00000459445 131 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 AC114811.1-201ENST00000507207 168 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC0.71□□□□□ -2.3
SCN1AP35498 AC005014.2-201ENST00000607795 599 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 AL591926.4-201ENST00000616895 298 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 AC099654.14-201ENST00000638599 341 ntBASIC0.71□□□□□ -2.3
SCN1AP35498 SNORD114-23-201ENST00000363536 72 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 RNA5SP499-201ENST00000363982 119 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 RNY3P11-201ENST00000364153 102 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 snoU2-30.1-201ENST00000365012 70 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 Y_RNA.329-201ENST00000365209 107 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN1AP35498 AL162725.1-201ENST00000435405 301 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 STAG3L5P-204ENST00000443759 179 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC0.7□□□□□ -2.3
SCN1AP35498 RPS26P48-201ENST00000491713 339 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 AC082651.2-201ENST00000496833 166 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 RNU6-875P-201ENST00000516488 106 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 MTND4LP32-201ENST00000636111 270 ntBASIC0.7□□□□□ -2.3
SCN1AP35498 Y_RNA.101-201ENST00000363154 102 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 RNU6-1187P-201ENST00000364771 110 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 MIR146A-201ENST00000385201 99 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 RNU6-131P-201ENST00000391144 107 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 RNU6-101P-201ENST00000410323 104 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 CALM2P4-201ENST00000430810 426 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 Y_RNA.691-201ENST00000516611 103 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 RNU7-28P-201ENST00000516759 62 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 RNU2-56P-201ENST00000516826 190 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 Y_RNA.714-201ENST00000517065 90 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC0.69□□□□□ -2.3
SCN1AP35498 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 JPX_2.1-201ENST00000614161 69 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 MIR376A1-201ENST00000616574 68 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 U2.1-201ENST00000618978 145 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 RNU6-879P-201ENST00000364328 108 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 RNU6-1040P-201ENST00000383974 107 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 Y_RNA.570-201ENST00000384750 101 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 MTCO2P27-201ENST00000420740 428 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 SNORA31.10-201ENST00000516482 106 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 MIR4764-201ENST00000580680 88 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 AC090971.5-201ENST00000621102 293 ntBASIC0.69□□□□□ -2.3
SCN1AP35498 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
SCN1AP35498 RNU6-490P-201ENST00000362985 107 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 Y_RNA.330-201ENST00000365230 109 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 Y_RNA.336-201ENST00000365307 109 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 Y_RNA.458-201ENST00000384240 102 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 Y_RNA.529-201ENST00000384586 119 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 RNU6-710P-201ENST00000410424 105 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 Y_RNA.605-201ENST00000410577 105 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 snoU13.25-201ENST00000458945 104 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.68□□□□□ -2.3
SCN1AP35498 AC005176.2-201ENST00000596933 147 ntBASIC0.68□□□□□ -2.3
SCN1AP35498 TRAJ36-201ENST00000614481 58 ntAPPRIS P1 BASIC0.68□□□□□ -2.3
SCN1AP35498 LRRD1-203ENST00000430130 2661 ntAPPRIS P1 TSL 5 BASIC0.68□□□□□ -2.3
SCN1AP35498 Y_RNA.315-201ENST00000365117 102 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNU6-442P-201ENST00000383968 104 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 Y_RNA.456-201ENST00000384232 111 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 Y_RNA.463-201ENST00000384271 102 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNU6-163P-201ENST00000384396 106 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 SNORA75.6-201ENST00000391318 127 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 MIR936-201ENST00000401264 98 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 AC245047.8-201ENST00000456455 284 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNU6-63P-201ENST00000516690 95 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 MIR5188-201ENST00000583467 113 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 AL121655.1-201ENST00000605811 308 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 AC004832.4-201ENST00000608952 331 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 AC243829.6-201ENST00000612652 106 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 DLX6-AS1_2.1-201ENST00000613701 207 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 AC005592.1-201ENST00000566527 1640 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC0.67□□□□□ -2.3
SCN1AP35498 RNU6-626P-201ENST00000363354 107 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 Y_RNA.253-201ENST00000364562 112 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNU6-1175P-201ENST00000365200 107 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNY3P14-201ENST00000384309 102 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 MIR520C-201ENST00000385005 87 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 SNORD99-201ENST00000408612 74 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNU6-1199P-201ENST00000411249 104 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RPL23AP54-201ENST00000495129 419 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 AL133373.1-201ENST00000497098 94 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 AC022493.2-201ENST00000506122 481 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 RNU6-966P-201ENST00000516479 104 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 SNORA40.14-201ENST00000516543 86 ntBASIC0.67□□□□□ -2.3
SCN1AP35498 UBE2V2P2-201ENST00000587677 504 ntBASIC0.67□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms