Protein–RNA interactions for Protein: P34896

SHMT1, Serine hydroxymethyltransferase, cytosolic, humanhuman

Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1P34896 SNORD116-13-201ENST00000384408 92 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 Y_RNA.512-201ENST00000384518 102 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 RNU6ATAC19P-201ENST00000408096 110 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 MIR1302-3-201ENST00000408128 138 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 RN7SKP200-201ENST00000410564 320 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 AL354695.1-201ENST00000427935 228 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 MTCO1P5-201ENST00000433573 344 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 snoU13.27-201ENST00000459278 104 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 RNU6-191P-201ENST00000516295 94 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 RNU6-1338P-201ENST00000516328 91 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 AC136628.3-201ENST00000521868 290 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 AL358944.1-201ENST00000528537 144 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 AL161670.1-201ENST00000554348 137 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 AL512605.2-201ENST00000592972 256 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 AL162424.1-201ENST00000602325 221 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 AC004832.4-201ENST00000608952 331 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 MIR8054-201ENST00000620877 86 ntBASIC1.74□□□□□ -2.13
SHMT1P34896 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.73□□□□□ -2.13
SHMT1P34896 RNU6-440P-201ENST00000390882 105 ntBASIC1.73□□□□□ -2.13
SHMT1P34896 MIR1304-201ENST00000408243 91 ntBASIC1.73□□□□□ -2.13
SHMT1P34896 MTCYBP9-201ENST00000431021 303 ntBASIC1.73□□□□□ -2.13
SHMT1P34896 RNU6-1096P-201ENST00000517089 102 ntBASIC1.73□□□□□ -2.13
SHMT1P34896 AP002004.2-201ENST00000531656 154 ntBASIC1.73□□□□□ -2.13
SHMT1P34896 MIR4709-201ENST00000577272 72 ntBASIC1.73□□□□□ -2.13
SHMT1P34896 TTK-211ENST00000627129 240 ntTSL 5 BASIC1.73□□□□□ -2.13
SHMT1P34896 ZGRF1-203ENST00000445203 6529 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
SHMT1P34896 ZNF209P-201ENST00000593450 2304 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 Y_RNA.16-201ENST00000362421 102 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 Y_RNA.267-201ENST00000364679 109 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 SNORA4.2-201ENST00000365313 147 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 RNU6-1323P-201ENST00000384025 107 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 Y_RNA.461-201ENST00000384263 103 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 Y_RNA.556-201ENST00000384677 113 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 AC004965.1-201ENST00000413033 213 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.72□□□□□ -2.13
SHMT1P34896 HSPE1P21-201ENST00000438283 308 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 MTND3P2-201ENST00000438452 342 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 TRMT112P2-201ENST00000512910 132 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 SERF1AP1-201ENST00000514575 187 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 RNU7-116P-201ENST00000516940 62 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 MIR4421-201ENST00000578133 69 ntBASIC1.72□□□□□ -2.13
SHMT1P34896 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC1.72□□□□□ -2.13
SHMT1P34896 OSBPL1A-217ENST00000638614 84 ntTSL 5 BASIC1.72□□□□□ -2.13
SHMT1P34896 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
SHMT1P34896 ASPN-202ENST00000375544 2470 ntAPPRIS P1 TSL 1 (best) BASIC1.72□□□□□ -2.13
SHMT1P34896 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.71□□□□□ -2.13
SHMT1P34896 AL391987.6-201ENST00000305671 199 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 RNU6-414P-201ENST00000363705 104 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 RPS4XP11-201ENST00000446897 772 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 AC009474.2-201ENST00000451383 136 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 AC233266.1-201ENST00000454518 96 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.71□□□□□ -2.14
SHMT1P34896 RNU6-1291P-201ENST00000516591 104 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 RNU7-28P-201ENST00000516759 62 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 RNU2-56P-201ENST00000516826 190 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 SNORA44.1-201ENST00000517031 108 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 DEFB108E-201ENST00000524692 240 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 AL122017.1-202ENST00000570612 319 ntTSL 5 BASIC1.71□□□□□ -2.14
SHMT1P34896 SNORA28-201ENST00000606769 126 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 AC242852.1-201ENST00000612151 96 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 AC244015.1-201ENST00000622301 99 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 AC068647.2-201ENST00000637380 353 ntBASIC1.71□□□□□ -2.14
SHMT1P34896 MIR335-201ENST00000362173 94 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 SNORA7.1-201ENST00000363750 139 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 SNORA72-201ENST00000384339 132 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 AL034345.1-201ENST00000407768 123 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 AL353743.2-204ENST00000456242 419 ntTSL 3 BASIC1.7□□□□□ -2.14
SHMT1P34896 U8.19-201ENST00000459095 133 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 SNORA31.10-201ENST00000516482 106 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 SNORA27.4-201ENST00000516650 95 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 SCARNA24.2-201ENST00000516968 130 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 AC100821.1-201ENST00000523153 2479 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 AL929325.1-201ENST00000603096 117 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 AL162730.1-201ENST00000605734 292 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 AC103810.8-201ENST00000607347 118 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.7□□□□□ -2.14
SHMT1P34896 AP001282.2-201ENST00000616149 309 ntBASIC1.7□□□□□ -2.14
SHMT1P34896 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.7□□□□□ -2.14
SHMT1P34896 SNORA1B-201ENST00000362535 133 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 RNU6-801P-201ENST00000364087 105 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 Y_RNA.265-201ENST00000364677 108 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 RNA5SP363-201ENST00000365072 115 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 Y_RNA.483-201ENST00000384380 101 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 RNU6-1031P-201ENST00000384773 107 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 MIR320A-201ENST00000385302 82 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 MT-TW-201ENST00000387382 68 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.69□□□□□ -2.14
SHMT1P34896 AL135790.2-201ENST00000437701 267 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 RNU7-34P-201ENST00000459394 64 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 AL049830.1-201ENST00000468034 425 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 AC091959.1-201ENST00000495857 238 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 AC011604.1-201ENST00000545978 196 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 POLR3GP1-201ENST00000594073 261 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 MIR8074-201ENST00000615081 81 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 AL078604.3-201ENST00000615580 211 ntBASIC1.69□□□□□ -2.14
SHMT1P34896 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
SHMT1P34896 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
SHMT1P34896 Y_RNA.237-201ENST00000364439 102 ntBASIC1.68□□□□□ -2.14
SHMT1P34896 SNORA72.4-201ENST00000384174 132 ntBASIC1.68□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms