Protein–RNA interactions for Protein: P31431

SDC4, Syndecan-4, humanhuman

Predictions only

Length 198 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4P31431 RNU6-1229P-201ENST00000364295 107 ntBASIC-0.76□□□□□ -2.53
SDC4P31431 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC-0.76□□□□□ -2.53
SDC4P31431 AC036101.1-201ENST00000449272 597 ntTSL 3 BASIC-0.76□□□□□ -2.53
SDC4P31431 AC093752.1-212ENST00000500559 453 ntTSL 1 (best) BASIC-0.76□□□□□ -2.53
SDC4P31431 RNU6-830P-201ENST00000516353 107 ntBASIC-0.76□□□□□ -2.53
SDC4P31431 AL357078.3-201ENST00000607528 618 ntBASIC-0.76□□□□□ -2.53
SDC4P31431 AL162726.3-218ENST00000636401 95 ntBASIC-0.76□□□□□ -2.53
SDC4P31431 RNU6-1115P-201ENST00000362490 106 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 RNU6-281P-201ENST00000384212 103 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 Y_RNA.477-201ENST00000384352 108 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 SNORD38C-201ENST00000384381 69 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 RNY3P9-201ENST00000384727 106 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC-0.77□□□□□ -2.53
SDC4P31431 DLGAP5P1-201ENST00000430307 464 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC-0.77□□□□□ -2.53
SDC4P31431 MIR4677-201ENST00000584153 80 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 AL158063.1-201ENST00000615349 536 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 AC134878.1-201ENST00000619901 243 ntBASIC-0.77□□□□□ -2.53
SDC4P31431 MIR655-201ENST00000362159 97 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 MIR30D-201ENST00000362283 70 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 RNU5F-3P-201ENST00000363767 117 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 SNORD14E-201ENST00000364009 85 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 Y_RNA.251-201ENST00000364551 99 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 SNORA63C-201ENST00000364578 129 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 MIR215-201ENST00000384858 110 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 AC084290.1-201ENST00000434995 374 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC-0.78□□□□□ -2.53
SDC4P31431 MTCO1P29-201ENST00000496868 288 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC-0.78□□□□□ -2.53
SDC4P31431 MDM2-233ENST00000545204 398 ntTSL 5 BASIC-0.78□□□□□ -2.53
SDC4P31431 CR383656.4-201ENST00000546909 122 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC-0.78□□□□□ -2.53
SDC4P31431 AL133215.3-201ENST00000609801 448 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 AC099654.12-201ENST00000639868 649 ntBASIC-0.78□□□□□ -2.53
SDC4P31431 Y_RNA.13-201ENST00000362403 112 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 RNU6-324P-201ENST00000363957 106 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 RNU6-1175P-201ENST00000365200 107 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 RNU6-933P-201ENST00000384424 107 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 Y_RNA.494-201ENST00000384432 111 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 SNORA8.3-201ENST00000384679 139 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 SNORA32.3-201ENST00000384772 121 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 RNU4-83P-201ENST00000410863 133 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 RNU6-847P-201ENST00000411115 108 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 AC244250.2-201ENST00000418731 148 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 GRM7-AS3-203ENST00000424366 486 ntTSL 3 BASIC-0.79□□□□□ -2.54
SDC4P31431 AC236972.2-201ENST00000434979 310 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC-0.79□□□□□ -2.54
SDC4P31431 RNU4ATAC8P-201ENST00000516196 109 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 AP002963.1-201ENST00000530590 184 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 AC006600.1-201ENST00000572529 153 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 AL022161.1-201ENST00000604390 213 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 AC005972.2-201ENST00000604690 348 ntBASIC-0.79□□□□□ -2.54
SDC4P31431 RNU6-181P-201ENST00000363225 107 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RNU6-268P-201ENST00000364174 107 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RNU6-811P-201ENST00000384069 107 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 MIR563-201ENST00000385080 79 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RNU6-1001P-201ENST00000411265 100 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 MTND4LP11-201ENST00000422184 280 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RPS29P8-201ENST00000445109 171 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 TPTE2P5-203ENST00000458118 728 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RNU7-73P-201ENST00000458743 63 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RNU7-187P-201ENST00000458985 68 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 snoU13.2-201ENST00000459201 104 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RNU6-189P-201ENST00000516120 101 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 Y_RNA.666-201ENST00000516187 112 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 RNU6-445P-201ENST00000516949 107 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 MTND4P7-201ENST00000523876 130 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 AL118558.2-201ENST00000556294 238 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 MIR4432-201ENST00000581823 84 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 MIR4639-201ENST00000584938 69 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 POLR3GP1-201ENST00000594073 261 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 MIR7844-201ENST00000616161 122 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 AC009161.2-201ENST00000624626 138 ntBASIC-0.8□□□□□ -2.54
SDC4P31431 SYCP2-202ENST00000371001 5479 ntAPPRIS P2 TSL 1 (best) BASIC-0.81□□□□□ -2.54
SDC4P31431 RNU6-517P-201ENST00000384362 110 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 SNORD38B-201ENST00000384690 67 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 RNU6-906P-201ENST00000384700 70 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 SNORA75.4-201ENST00000391278 119 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 BX295541.1-201ENST00000417774 250 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 MTND2P18-201ENST00000419962 1030 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 AL031667.1-201ENST00000440222 725 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 UQCRBP2-201ENST00000447827 297 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 snoU13.16-201ENST00000459350 104 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 AC093023.1-201ENST00000547375 507 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC-0.81□□□□□ -2.54
SDC4P31431 AP001180.6-201ENST00000584918 159 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 MIR4424-201ENST00000585257 86 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 POLR3GP2-201ENST00000588366 668 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 AL133255.1-201ENST00000606374 441 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 AL590491.3-201ENST00000610731 82 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 AC103705.1-201ENST00000619013 241 ntBASIC-0.81□□□□□ -2.54
SDC4P31431 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC-0.81□□□□□ -2.54
SDC4P31431 CCDC7-215ENST00000639629 4158 ntAPPRIS ALT2 TSL 5 BASIC-0.82□□□□□ -2.54
SDC4P31431 Y_RNA.243-201ENST00000364481 109 ntBASIC-0.82□□□□□ -2.54
SDC4P31431 MTCO3P40-201ENST00000392516 676 ntBASIC-0.82□□□□□ -2.54
SDC4P31431 SNORD93-201ENST00000408813 74 ntBASIC-0.82□□□□□ -2.54
SDC4P31431 RNA5SP118-201ENST00000410385 109 ntBASIC-0.82□□□□□ -2.54
SDC4P31431 HMGN1P33-201ENST00000432945 451 ntBASIC-0.82□□□□□ -2.54
SDC4P31431 AC108059.2-201ENST00000434626 151 ntBASIC-0.82□□□□□ -2.54
SDC4P31431 MTCO3P38-201ENST00000468910 766 ntBASIC-0.82□□□□□ -2.54
Retrieved 100 of 98,524 protein–RNA pairs in 128.1 ms